barSeed - Barley Seed Development Database

Probe CUST_5142_PI390587928

Source Contig U35_14454

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_5142_PI390587928	Hv_44K_v2	TTCTTGCCTTGTATCTCACTCGTCTCGCTCGTGCTTGTGTCTGCGCAGATGGTGTCGGAG	317	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_96.3	741	2e-24	353 - 412	100	60 / 60	plus	ABC01776 ABC01778
Harvest21	ABC01780	1201	3e-25	318 - 377	100	60 / 60	plus
Harvest35	U35_14454	869	3e-25	318 - 377	100	60 / 60	plus

Contig Sequence (869 bp)

>U35_14454 869 Hv_44K_v2
CTCTCTACGCTCCGGCAAGAACCACCAGCGCTCACCTCTTCCGTCGCTTCCCCGCTGCAA
TGTCGACCGACGTGGCTGCCGACGTCCCGGCCCCTGAGGTGGAGGTGGCCGCCGACCCCG
TCGTGGAGACCACGGCTGAGGCCGCCGCCGGCGACGCGAAGCCGGCCAAGGAGACCAAGG
TCAAGGCTGCCAAGGCCAAGAAGCCGTCCGCTCCTAGGAAGCCCCGCGCCACCCCCGCAC
ACCCCACCTACGCCGAGGTAAACCCAGAGTCCTTCGCTGAATCTCGCTCCATTCTCGCTC
GAATTGCTGTCTGTTCCTTCTTGCCTTGTATCTCACTCGTCTCGCTCGTGCTTGTGTCTG
CGCAGATGGTGTCGGAGGCGATCACCGCGCTCAAGGAGAGGGGCGGGTCGAGCACCATCG
CCATCGCCAAGTTCGTCGAGGACAAGCACAAGGCGCACCTCCCGGCCAACTTCCGCAAGA
TGCTGTCGGTGCAGCTCAAGAAGCTGGTCGCTTCTGGCAAGCTGACCAAGGTCAAGGCCT
CCTACAAGCTGTCGGCCGCCCCGGCCAAGCGCAAGCCGGCGGCCAAGAAGAAGCCCACCG
CCAAGAAGCCCAAGGCCAAGGCGCCAGCGAAGAAGGCCGCCGCCAAGTCACCCGCGAAGA
AGGCCGCCGCCAAGCCCAAGGCCAAGGCCCCTGCCAAGACCAAGGGCGCAGCCAAGCCGA
AGGGCCGCCCCGCCAAGGCGGCCAAGACCTCAGCCAAGGACGCGCCAGGGAAGAAGGCGC
CGGCCGCTGCCGCCGCCCCCAAGAAGCCGGCAGCCAGGAAGCCGCCCACCAAGAGATCCG
CGCCGGTGAAGAAGTCCGCGCCCGCCAAG

Homology of Contig U35_14454 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None