barSeed - Barley Seed Development Database

Probe CUST_5141_PI390587928

Source Contig U35_14455

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_5141_PI390587928	Hv_44K_v2	GACTGTACTGTAACTGAAACAATCTAGTACTACGTCTGATGAATCAAATAAACTGAAGTC	753	GeneList: salmon MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	6.834	5.491	1.239	0.680	0.213	0.325
Raw	5081.883	6804.667	1279.845	1196.652	119.516	205.061

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK375978	860	2e-24	794 - 853	100	60 / 60	plus	ABC03726 ABC30109
JLOC1	JLOC1_51704.1	894	8e-25	476 - 535	100	60 / 60	plus
Harvest21	ABC03726	1013	3e-25	929 - 988	100	60 / 60	plus	ABC03726
Harvest21	ABC03725	846	3e-25	768 - 827	100	60 / 60	plus
Harvest35	U35_14456	936	3e-25	833 - 892	100	60 / 60	plus
Harvest35	U35_14455	832	3e-25	754 - 813	100	60 / 60	plus

Contig Sequence (832 bp)

>U35_14455 832 Hv_44K_v2
GGAGCACTTCGCCCCACAGCTCATACCCTTCTCCATCTCTCGCCACTCTCCCTCCCTCTC
TCTGAACGCGTGCTCGGAGCAACGGACGCCATGGACAATCCTCCAGCCGTGCCGGCGGCG
GCCAACAACGTGACCAATCCACAGGCAGTGGCACTGGCAGCGGCCCACAACGTGGCCAAA
CCTCCGGCGGCACCAGCGGCCAACAAGGTTGCTAATCCTCCGGCGGCACCAGCGGCCAAC
AACACGGGCAAACCTCCGACGTCGGCACCAGCGGCCAACAACATGGGCAAACCTCCGGCG
GCGGCAGCGGCCGACAACATGGGCAAACCTCCGGCGGCGGCAGCAGCGGCCGACAACACG
GGCAAACCTCCGGCGGCGGCGGCGGCCAACAACGGTGCATATTCTCTGTCGGTCTCGATG
GTGGTGAGAGCTCCTGCAGCGACTGTGGTCATCAATCCAGTGAACCCACCAGTGAATCCA
CCAGCACAGGCGGCGTCACCGCATGGAGCTGTGGAATTTGTGGTGTTCACTGTTTTCCTC
TTCATCTTCATCTTGGTGATCGGCGTGATTCTGCTGCTGAATTGGTGCCTCAAGTAGAGA
ATCTATGTCACGTCCGGGGAAGAAGAAGAAACGTACTCTAGATCGCAGGGGTACGCCACC
CGATGTGGACGACCGTAAATAAGATGGCGCAAGTGTGTGTTAAGTTAAAGCTATCGTGCC
AGCGGTTGTGTGGAGCTTATAAGCTGTGTGCTGGACTGTACTGTAACTGAAACAATCTAG
TACTACGTCTGATGAATCAAATAAACTGAAGTCTTAAAAAAAAAAAAAAAAA

Homology of Contig U35_14455 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None