barSeed - Barley Seed Development Database

Probe CUST_5140_PI390587928

Source Contig U35_14456

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_5140_PI390587928	Hv_44K_v2	CTGTAACTGAAACAATCTAGTACTACGTCTGATGAATCAAATAAACTGAAGTCTTCGTCT	839	GeneList: grey60 MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	7.698	6.410	1.362	0.700	0.236	0.363
Raw	3513.260	4910.552	865.505	757.838	79.318	139.955

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK375978	860	2e-24	801 - 860	100	60 / 60	plus	ABC03726 ABC30109
JLOC1	JLOC1_51704.1	894	8e-25	483 - 542	100	60 / 60	plus
Harvest21	ABC03726	1013	3e-25	936 - 995	100	60 / 60	plus	ABC03726
Harvest21	ABC03725	846	2e-22	775 - 829	100	55 / 55	plus
Harvest35	U35_14456	936	3e-25	840 - 899	100	60 / 60	plus
Harvest35	U35_14455	832	2e-22	761 - 815	100	55 / 55	plus

Contig Sequence (936 bp)

>U35_14456 936 Hv_44K_v2
CTGGCTACAACTACTCTACCCGGTTACTTCTTCCATCGCTGGCCAGAGAGCACTTCGCCC
CACAGCTCATACCCTTCTCCATCTCTCGCCACTCTCCCTCCCTCTCTCTGAACGCGTGCT
CGGAGCAACGGACGCCATGGACAATCCTCCAGCCGTGCCGGCGGCGGCCAACAACGTGAC
CAATCCACAGGCAGTGGCACTGGCAGCGGCCCACAACGTGGCCAAACCTCCGGCGGCACC
AGCGGCCAACAAGGTTGCTAATCCTCCGGCGGCACCAGCGGCCAACAACACGGGCAAACC
TCCGACGTCGGCACCAGCGGCCAACAACATGGGCAAACCTCCGGCGGCGGCAGCGGCCGA
CAACATGGGCAAACCTCCGGCGGCGGCAGCAGCGGCCGACAACACGGGCAAACCTCCGGC
GGCGGCGGCGGCCAACAACGGTGCATATTCTCTGTCGGTCTCGTTTTCTCTACGTGATGA
TCAATCGGCAGTAAAGATGGTGGTGAGAGCTCCTGCAGCGACTGTGGTCATCAATCCAGT
GAACCCACCAGTGAATCCACCAGCACAGGCGGCGTCACCGCATGGAGCTGTGGAATTTGT
GGTGTTCACTGTTTTCCTCTTCATCTTCATCTTGGTGATCGGCGTGATTCTGCTGCTGAA
TTGGTGCCTCAAGTAGAGAATCTATGTCACGTCCGGGGAAGAAGAAGAAACGTACTCTAG
ATCGCAGGGGTACGCCACCCGATGTGGACGACCGTAAATAAGATGGCGCAAGTGTGTGTT
AAGTTAAAGCTATCGTGCCAGCGGTTGTGTGGAGCTTATAAGCTGTGTGCTGGACTGTAC
TGTAACTGAAACAATCTAGTACTACGTCTGATGAATCAAATAAACTGAAGTCTTCGTCTA
AAAAAAAAAAAAAAAATAAAAAAAATAAAAAAAAAG

Homology of Contig U35_14456 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None