barSeed - Barley Seed Development Database

Probe CUST_5138_PI390587928

Source Contig U35_14458

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_5138_PI390587928	Hv_44K_v2	GGTCCATGTGACGGTGTCGAGAACAAAATAGTGCATTGTTTATCTAATTAATTATGATTG	1175	GeneList: blue MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	1.637	1.362	1.134	0.802	0.418	0.312
Raw	41862.667	52940.833	39074.667	42246.300	7888.653	6496.027

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_19848.2	513	2e-24	430 - 489	100	60 / 60	plus	ABC01776 ABC01778
MLOC	MLOC_19848.1	948	2e-24	565 - 624	100	60 / 60	plus	ABC01776 ABC01778
JLOC1	JLOC1_13758.1	792	8e-25	565 - 624	100	60 / 60	plus
Harvest21	ABC51829	468	3e-25	409 - 468	100	60 / 60	plus
Harvest21	ABC32062	470	3e-25	391 - 450	100	60 / 60	plus
Harvest21	ABC01776	1258	3e-25	1165 - 1224	100	60 / 60	plus	ABC01776
Harvest35	U35_49879	468	3e-25	409 - 468	100	60 / 60	plus
Harvest35	U35_14458	1269	3e-25	1176 - 1235	100	60 / 60	plus

Contig Sequence (1269 bp)

>U35_14458 1269 Hv_44K_v2
TCACCCAGCTCTCACCCGCATCTCCCTCACCTCCGGCGAAAGACACACCAGCGCGCTCCC
CTCGCTCTCCCGCAGCAATGTCGACCGACGCAGCCGCCGACATCCCGGTGCCTCAGGTGG
AGGCGACCGCCGACCCCGTCGTGGAGACCACGGCTGACGCCGCCGCCGGCGACGCGAAAC
CGGCCAAGGCGACCAAGGCCAAGGCCGCCAAGACGCCCAAGGCCAAGAAGCCCTCCGCCC
CGAGGAAGCCCAAGGCCGCCCCCGCCCACCCGACCTACGCTGAGATGGTGTCGGAGGCGA
TCACCGCGCTCAAGGAGAGGGGCGGGTCGAGCACCGTCGCCATCGGCAAGTTCATCGAGG
ACAAGCACAAGGCGCACCTCCCGGCCAACTTCCGCAAGATCATGCTGACGCAGATCAAGA
AGCTGGTCGCCGCCGGCAAGCTGACCAAGGTCAAGGCCTCCTACAAGCTCGCCAAGGCCC
CCGCAGCCCCCAAGAAGCCCAAGACCAAGGCGCCAGCCAAGAAGAAGCCCGCCGCGAAGA
AGAAGGCGCCGGCCAAGAAGACCACCGCCAAGTCCCCTGCCAAGAAGAAGGCGCCGGCCA
AGAAGACCACCGCCAAGGCCCCAGCCAAGACCAAGGCCGCCGCCAAGCCCAAGGCGGCAG
CGAAGCCCAAGGCAGCCGCCAAGAAGGCACCAGCCAAGACCACCAAGGCCGCCGCCAAGC
CCAAGCCGGCCGCCAAGACGAAGGCTGCTGCCAAGCCGAAGGGCCGCCCCGCCAAGGCCG
CCAAGACCTCCGCCAAGGACGCACCAGGGAAGAAGGCGGCGGCACCCGCTACCCCCAAGA
AGCCAGCCGCCAGGAAGCCGCCCACCAAGCGGTCGGCGCCGGTGAAGAAGGCCACGCCCG
CCAAGAAGGCCCCCGCCAAGAAGGCCAAGAAGTAGAGAGCCCGTCCTCCCGCAACGAGTT
TCCATTAGCAGTTTTCCCATGTTCTGTGTTGTTAGTCCAGGATTCTGTGTTCTAGACTGT
AAATTTTATATCCGGGTCGTGGTGCACTGGTCTCGGCCGGCGTACCCTTGGAGGTGTATC
TGTGGATGACGAAGACGGCGGCGGCGAGGGTTTGTCCCCGGTCGTCCATATTACCGTAGC
AGCCTGATGTGATGAGGTTTTTTTTAGCGTAGCAAGGTCCATGTGACGGTGTCGAGAACA
AAATAGTGCATTGTTTATCTAATTAATTATGATTGATCACTCTTTGCCTTGCAAAAAAAA
AAAAAAAAA

Homology of Contig U35_14458 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None