barSeed - Barley Seed Development Database

Probe CUST_5130_PI390587928

Source Contig U35_40725

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_5130_PI390587928	Hv_44K_v2	TACATAATGTGTAAGTACATGAAATGACAGATGTGTCTATCATTCATCACATGTGCCTGT	46	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK249068.1	2965	2e-24	2840 - 2899	100	60 / 60	plus	ABC04958 ABC04961
MLOC	MLOC_7446.1	2218	2e-24	762 - 821	100	60 / 60	minus	ABC04961 ABC38491
MLOC	MLOC_7446.3	2119	2e-24	736 - 795	100	60 / 60	minus	ABC04961 ABC38491
JLOC1	JLOC1_4909.1	1813	8e-25	1221 - 1280	100	60 / 60	plus
JLOC1	JLOC1_30461.1	727	6e-21	146 - 204	97	57 / 59	minus
Harvest35	U35_40725	385	3e-25	47 - 106	100	60 / 60	minus

Contig Sequence (385 bp)

>U35_40725 385 Hv_44K_v2
TTTTTTTTTTTTTTTACACATCTTTTGAAATAAAATGAAAAGAATAACAGGCACATGTGA
TGAATGATAGACACATCTGTCATTTCATGTACTTACACATTATGTAAGGCAGAGGTCATG
ATTTGCACATATGGTAATTAACTTTAGGAACTTTATAATCCATCCATTTCTAGATCATGC
ACTCAGTTACACTTACCTGCCCACATTGCATTAGTAATTTTTGTAGACATATTTAGTTAT
CTCAGCCTTATCAGTCAAATTTAAACTGCACCATCTAACTCATCTGATTAGACTACTGAC
AAAAGTGATCGTCTCGACCGCTGCCCCGAGGTTGAATCCCCCAACTGCGCTCCGGTGCCA
AGGTACTGGTTCATAAGTCTACTGT

Homology of Contig U35_40725 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None