- Probe CUST_512_PI390587928
- Source Contig U35_44060
Probe Details
Probe ID | Chip | Probe Sequence (60 bp) | Probe location | Differentially Expressed |
---|---|---|---|---|
CUST_512_PI390587928 | Hv_44K_v2 | CACGTCCGCTGTATGGTGACGAGGAGCCAGCTAAGGTTTTGGAGGCATTCCCACTGAATT | 132 | GeneList: darkorange MasterList: None |
Probe Values
3 dpa | 4 dpa | 5 dpa | 6 dpa | 7 dpa | 8 dpa | |
---|---|---|---|---|---|---|
Normalized | 0.882 | 1.037 | 1.637 | 1.441 | 0.813 | 0.385 |
Raw | 18.072 | 29.130 | 44.008 | 56.345 | 11.865 | 5.836 |
Probe Sequence's BLAST hits in Barley Unigene Datasets
Dataset | Hit | Hit Length | E-value | Position on Hit | % Identity | Match | Direction | Probes on Sequence |
---|---|---|---|---|---|---|---|---|
MLOC | AK362062 | 4014 | 2e-24 | 966 - 1025 | 100 | 60 / 60 | plus | ABC04174 ABC04175 |
MLOC | MLOC_17475.3 | 2711 | 2e-24 | 672 - 731 | 100 | 60 / 60 | plus | ABC04175 |
MLOC | MLOC_17475.4 | 1189 | 2e-24 | 669 - 728 | 100 | 60 / 60 | plus | ABC04175 |
MLOC | MLOC_17475.2 | 1404 | 2e-24 | 676 - 735 | 100 | 60 / 60 | plus | ABC04175 |
JLOC1 | JLOC1_12064.2 | 1281 | 8e-25 | 675 - 734 | 100 | 60 / 60 | plus | |
JLOC1 | JLOC1_12064.1 | 2109 | 8e-25 | 675 - 734 | 100 | 60 / 60 | plus | |
Harvest21 | ABC41497 | 192 | 3e-25 | 133 - 192 | 100 | 60 / 60 | plus | |
Harvest35 | U35_44060 | 192 | 3e-25 | 133 - 192 | 100 | 60 / 60 | plus |
Contig Sequence (192 bp)
>U35_44060 192 Hv_44K_v2 CAGACCAGCCAGCCTATCCTACTACAGGGCCTCCGATGGGCACCCTCCAGAGCTTAGTGG AGGACTTCCAGTCTCTCTCAGTGAGTTCTGCACCTGGATCGCTTGACCAGGGTGTTGATG TGAATGGGCTACCACGTCCGCTGTATGGTGACGAGGAGCCAGCTAAGGTTTTGGAGGCAT TCCCACTGAATT
Homology of Contig U35_44060 to Model Species (E-value threshold 1e-50)
Pseudo-peptide dataset | Hit | Hit length | E-value | Description |
---|---|---|---|---|
Rice v7 | None | |||
Brachypodium v1_2 | None | |||
Arabidopsis v10 | None |