barSeed - Barley Seed Development Database

Probe CUST_5128_PI390587928

Source Contig U35_26433

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_5128_PI390587928	Hv_44K_v2	AGGTGATTTGTATCATACCACACTCTACAGAGCTGCAGCCCCATCATCACATCATGTTGT	507	GeneList: orange MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	0.838	0.848	2.049	1.894	0.864	0.928
Raw	6.539	9.944	24.040	31.183	4.841	6.605

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_65292.1	2899	2e-24	924 - 983	100	60 / 60	minus	ABC41721 ABC41983
JLOC1	JLOC1_42956.1	2010	8e-25	1606 - 1665	100	60 / 60	plus
JLOC1	JLOC1_42957.1	2541	8e-25	542 - 601	100	60 / 60	minus
Harvest21	ABC36474	484	3e-25	380 - 439	100	60 / 60	plus
Harvest35	U35_26433	612	3e-25	508 - 567	100	60 / 60	plus

Contig Sequence (612 bp)

>U35_26433 612 Hv_44K_v2
CGCGGGGCAAGAGGCGGCGATAGAGCACCGGTGGAACCAGCACGGCCTCGGCGGCGACAA
CATCTTGGGCAGCTGCCGTGACCTCCACCCGGGGCGGGTGAGCCTGCTGCATTGGTCGGG
GTCCGGCAAACCGTGGGCGCGGCTGGGCGGCGGGCGGCCGTGCCCGCTGGACGCGCTCTG
GGCGCCGTTCGACCTCTACGGCCCCGCCGCCGTGGAGCCGGCCCGGTAACCAACCGCAAA
CAGACTACTACTCTACTACAAAGATTCTTTTCCTTCTTTCGCCGACCCGTATAAATCCTG
AGAGCTCTAATTCTTGGTCACCGTTACATGTTCAAAAACCTATATAAATTTTTTTTCTCC
TCCTTCTTCTTGTCCTCCTCTTTCCCGTTTTAATTTCTTCTTCTGTTCAACTAAATGTTT
TTGTGTTAGATTGTTGGTGTTGGTGCTGAGTTGCGATCTGCTGTCCCACATACATATTTT
TGATCGTTTGTTTGGTGCTACAAAGAAAGGTGATTTGTATCATACCACACTCTACAGAGC
TGCAGCCCCATCATCACATCATGTTGTTGATGATGATGATGATGATGATAAGTAAATATA
TAAATAAATAAA

Homology of Contig U35_26433 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None