barSeed - Barley Seed Development Database

Probe CUST_5121_PI390587928

Source Contig U35_38410

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_5121_PI390587928	Hv_44K_v2	ATTATGAGACTGTCTAACTCTTTTTCTTTCTGTTGGCTAGCTTGTTGCTGCTAAAACAGT	162	GeneList: turquoise MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	1.079	1.206	1.076	0.801	0.455	0.518
Raw	35.432	58.997	47.870	55.579	11.590	13.807

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
Harvest21	ABC07850	960	3e-25	163 - 222	100	60 / 60	plus	ABC07850
Harvest35	U35_38410	640	3e-25	163 - 222	100	60 / 60	plus

Contig Sequence (640 bp)

>U35_38410 640 Hv_44K_v2
GCCGCGCTATGTTGAAGGAGTCTGAGAAAATAGCGCTGCAAAATGATCAAGAGAAATCTG
CCGCTTTGGAGATACGCAATAAGGCTCATGAAAAACTGACGAAGCAACACTCTAAAATCC
AGGATGTACATGAACTGGTAAGAACAGCTAAGGCATGATTGAATTATGAGACTGTCTAAC
TCTTTTTCTTTCTGTTGGCTAGCTTGTTGCTGCTAAAACAGTTGAAAAGGAAGTTAAAGC
TCGCAAAGCTAAGCTTAATGATGAAAGTGTATCAGTTATGTCATTTGACGCACAGATTGT
TGATTGGCAAGGAAAAGTACATGAAATGGAGGGGCGTCTCAAGCGGAAAGTGGAAGAAAG
GAATCAAATAATAGCAGATGAAAATCAGAAGCTGGGCGCTTTGAGCTCCGAGATTGAGGG
TAAACAGCAGCGCCTTGAACCTAGAGAAACGGAAGTAGAGGCAATGACCGCTAAGGCTAT
GAATTTGCGTATGGAAGCTGCTTCAGTAAAGACTGCTTCCATGGCAGAACAGCAGAAAAT
TCACGCAGAATTCAACAACATTGTGAAGGCGTTCGTCACCTACATGGATAGCATCAACCC
TTTACTCGAGCAAGTTGAGGGAGTTGACAGGCAATCGGCA

Homology of Contig U35_38410 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value
Rice v7	None
Brachypodium v1_2	Bradi1g01670.1	507	2e-55
Arabidopsis v10	None