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Probe Details

Probe IDChipProbe Sequence (60 bp)Probe locationDifferentially Expressed
CUST_5120_PI390587928Hv_44K_v2AAACAAAGAAAATAACATGATGCCTGCCAGATGGACTTCCCACAAGATTCCACCGAAGGT549GeneList: green
MasterList: None



Probe Values

3 dpa4 dpa5 dpa6 dpa7 dpa8 dpa
Normalized 0.9321.2941.3240.9540.2960.338
Raw 577.6661195.4091116.5421338.050137.090170.714



Probe Sequence's BLAST hits in Barley Unigene Datasets

DatasetHitHit LengthE-valuePosition on Hit% IdentityMatchDirectionProbes on Sequence
MLOCMLOC_12827.315102e-24974 - 103310060 / 60plus None
MLOCMLOC_12827.215162e-241061 - 112010060 / 60plus None
MLOCMLOC_12827.411702e-241035 - 109410060 / 60plus None
JLOC1JLOC1_8625.115418e-25976 - 103510060 / 60plus
Harvest21ABC343716383e-25550 - 60910060 / 60plus
Harvest35U35_384116383e-25550 - 60910060 / 60plus



Contig Sequence (638 bp)

>U35_38411 638 Hv_44K_v2
TGTGCGTGCCTTCTGGCATGACGAGCGGTACAAGGACGACCTCCGGTACCTCAAAGTGTG
GTTAGAATACGCTGGGAACTGTTCGGACGCTGAGGTGATATTCAGGTTCCTGGAGTCCAA
CCAGATTGGTGAGGGCCATGCTGTTTTCTACATTCGCTATGCGTTGCTAATGGAGTCGAA
GAACAAGCTTAAGAAAGCTGACGAGATCTTTGTTCTTGGAATAGCTAGGAAAGCAAAGCC
TGTGGAGAAGTTGGAAACTACATACAGGGCATTTCTTCGGAGATCAACCAAAAAGAAGGG
ACACGAGGATGATACGGCAAGTGACAATCAGCCAATACGCAAATTCGGTAGTGACTTGAA
CCGTGGTGACACCAGAGGTCAGCATGCAGAGAATTCACACCTGTTGGCAAAGCCTAGGGT
AACGCTGCAAAGATTCGATTTTAATACGCAAATTTCAATTTACAAAGAGAACCCATTACC
AAGTCAGGGTCTTGAGAGAGCTAGGAGCAAAGACAAGACCTGGAACACCCTTGGAACACA
AGCAGATAGAAACAAAGAAAATAACATGATGCCTGCCAGATGGACTTCCCACAAGATTCC
ACCGAAGGTAGCAGCACGGCCAGCAGTTCCGCCAGCTC



Homology of Contig U35_38411 to Model Species (E-value threshold 1e-50)

Pseudo-peptide datasetHitHit lengthE-valueDescription
Rice v7LOC_Os02g10020.13995e-98protein|Mad3/BUB1 homology region 1 domain containing protein, expressed
Brachypodium v1_2Bradi3g06840.23255e-116
Arabidopsis v10AT2G33560.23961e-52| Symbols: BUBR1 | BUB1-related (BUB1: budding uninhibited by benzymidazol 1) | chr2:14213810-14215918 REVERSE LENGTH=396