barSeed - Barley Seed Development Database

Probe CUST_5117_PI390587928

Source Contig U35_38415

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_5117_PI390587928	Hv_44K_v2	TCTTAGGGAATGGTTATTCTTTGACAGACCAAGAAGGGCATTTGAGAGTGGCAACCGCAA	604	GeneList: tan MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	0.532	0.822	1.468	1.927	1.052	0.811
Raw	56.117	122.632	213.331	446.979	84.563	71.939

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK376294	2074	2e-24	1139 - 1198	100	60 / 60	plus	None
MLOC	MLOC_11494.2	2902	2e-24	913 - 972	100	60 / 60	plus	ABC05892 ABC05893
MLOC	MLOC_11494.1	2745	2e-24	822 - 881	100	60 / 60	plus	ABC05892 ABC05893 ABC12784
JLOC1	JLOC1_7616.1	1762	8e-25	543 - 602	100	60 / 60	plus
Harvest21	ABC34375	733	3e-25	605 - 664	100	60 / 60	plus
Harvest35	U35_38415	733	3e-25	605 - 664	100	60 / 60	plus

Contig Sequence (733 bp)

>U35_38415 733 Hv_44K_v2
GGTCACTGGGTCATGGAATGCAGGGAGATTGTGGGGGAGAAGTGACTGATGTTGCTAATG
CATTGTTCAGCGATCAGATGTACTATATAGACCATGAACTCAGTATTGATGATTTTCTTC
ATGGGTCAAACCCAGATGGCCTCAATAACCTGCAAGGGACTGGTCAGCCGGAACATCAAC
AGTTCAATCTGCAACATTCTAGTAATTCATATGCTGATGCAAATAACTCTGTGCAAAGTA
CTGGAGATGTTTTTTTCCACATGTCAGACTTGCTCACAACAGTCTGCCCGTCACCTTCTC
AATATTTGGGGCCAAAATGTGCACTCTGGGATTGTGGTCGACCTGTGCGAGGATCAGAAG
AATGTCAAGACTACTGCAACCCGTATCATGCTGGTTTGGCTTTGAATGATGATGGTCTTC
TAGGGACAAGGCCTGTGATGCGACCAAGGGGTATTGATTTGAAAGACGGGCCCCTATTTG
ATGCTCTTTGTGCAAAAGTCCAAGGAAAAAATGTTGGTATTCCTGTCTGTGAAGGAGCTG
CAACGTCAAAATCACCTTGGAATGCACCTGAACTTTTTGATCTTTCTCTTCTTGAGGGTG
AATCTCTTAGGGAATGGTTATTCTTTGACAGACCAAGAAGGGCATTTGAGAGTGGCAACC
GCAAGCAAAGGTCATTGCCAGATTACAACGGCCNGTGGATGGCATGAATCAAGGAAGCAA
GTGATGAAGGACT

Homology of Contig U35_38415 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os05g43950.1	642	1e-126	protein\|expressed protein
Brachypodium v1_2	Bradi2g19820.1	583	2e-143
Arabidopsis v10	AT1G28520.1	486	7e-66	\| Symbols: VOZ1, ATVOZ1 \| vascular plant one zinc finger protein \| chr1:10029713-10031479 FORWARD LENGTH=486