barSeed - Barley Seed Development Database

Probe CUST_5114_PI390587928

Source Contig U35_14460

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_5114_PI390587928	Hv_44K_v2	CAAGTTCCCTTTCTTCACTTACTTTTTGCCAAGGAAGGTCAGCAATAAGTTCCAAATAAG	215	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK248688.1	2538	2e-24	1127 - 1186	100	60 / 60	minus	ABC01361 ABC03967 ABC03968 ABC34343 ABC47231
MLOC	MLOC_71112.2	3428	2e-24	1316 - 1375	100	60 / 60	minus	ABC03967 ABC03968 ABC03969
MLOC	MLOC_71112.1	3368	2e-24	1256 - 1315	100	60 / 60	minus	ABC03967 ABC03968 ABC03969
JLOC1	JLOC1_47229.1	3451	8e-25	1218 - 1277	100	60 / 60	minus
Harvest21	ABC03968	3238	3e-25	1122 - 1181	100	60 / 60	minus	ABC03968
Harvest21	ABC03967	275	3e-25	216 - 275	100	60 / 60	plus	ABC03967
Harvest35	U35_14462	3284	3e-25	1168 - 1227	100	60 / 60	minus
Harvest35	U35_14460	275	3e-25	216 - 275	100	60 / 60	plus

Contig Sequence (275 bp)

>U35_14460 275 Hv_44K_v2
GAGGCAAAGACGAACTTGGTGATAATGATGATGATGAAGATGACATAGCTGCATTGGAAA
GGAAGATGCAGAATGCAGGAATGCCTGCTAATATTTGGAAGCATGCCCAAAGGGAGTTGA
GACGCTTGAGGAAAATGCAACCTCAGCAACCTGGATATAGTAGCTCTCGAGCTTATTTGG
AACTTATTGCTGACCCTCCTTTGCAGCTCTAAGGTCAAGTTCCCTTTCTTCACTTACTTT
TTGCCAAGGAAGGTCAGCAATAAGTTCCAAATAAG

Homology of Contig U35_14460 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None