barSeed - Barley Seed Development Database

Probe CUST_5111_PI390587928

Source Contig U35_14462

barSeed

Links

Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_5111_PI390587928	Hv_44K_v2	TAGCATATAGAGTGAACAAACACGCTAAGACGTGTCTATATACATCCGATTCAGAAAAAA	3213	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_71112.2	3428	6e-24	3362 - 3420	100	59 / 59	plus	ABC03967 ABC03968 ABC03969
MLOC	MLOC_71112.1	3368	6e-24	3302 - 3360	100	59 / 59	plus	ABC03967 ABC03968 ABC03969
JLOC1	JLOC1_47229.1	3451	3e-24	3264 - 3322	100	59 / 59	plus
Harvest21	ABC03968	3238	3e-25	3168 - 3227	100	60 / 60	plus	ABC03968
Harvest35	U35_14462	3284	3e-25	3214 - 3273	100	60 / 60	plus

Contig Sequence (3284 bp)

>U35_14462 3284 Hv_44K_v2
ATTTTACACACATAAATATCCCCGTCGTCTCCCACCTCTCTCAATTCCTTCTCCCCCCCT
TCTCTTCCTCCACCCGAATTCCTGTTCCGCCAGCCGTACGCCGCACACACCACAGCAGTG
CGTCGGCGGCCATGGCGGACGCGCCGGTGGAGCTGCCGGGACGGCTCGCCATACTGCCGT
TCCGCAACAAGGTGCTCCTCCCGGGCGCCATCGTGCGGATCCGATGCACCACCCCCAGCA
GTGTCAAGCTGGTGGAGCAGGAGCTCTGGCAGAGGGAGGACAAGGGTCTGATTGGGGTGC
TTCCCGTGCGGGACTCTGAGGCTGCGGCTGTTGGTTCGATCCTGTCGCCTGGAGTGGGCG
GTGATTCAGGGGAAGGAGGCCGCCGGTCGCCTGGTGCTTCTGGGGGAGAGTCGAGCAAAC
AGGATGCAAAGAGCGGGAAGGAGCCCATTCACTGGCACAGCCGGGGAGTTGCTGCTAGAG
CTCTACACCTTTCAAGAGGGGTGGAGAAACCAAGTGGAAGGGTTACATACATTGTTGTTC
TCGAAGGCTTATGTAGGTTCAGTGTTGAGGAACTCAATGCAAGAGGGTCGTATCATGTCG
CCCGTGTTTCACGACTTGACATGACAAAGACTGAGTTGGAGCAGGTAGAGCAAGACCCAG
ATCTAATTGCTCTTTCGAGGCAATTTAAAGCAACTGCTATGGAACTAATTTCAGTCCTCG
AGCAGAAGCAGAAGACGGTTGGTAGGACTAAGGTGCTACTCGAGACAGTTCCTGTATACA
GGCTAGCCGATATTTTTGTTGCTAGCTTTGAAATAAGCTTTGAGGAGCAGCTCGCTATGC
TGGATTCAGTTGACTTGAAAGTGAGACTTTCCAAGGCAACAGAACTTGTAGACAGGCACC
TGCAGTCAATTCTTGTAGCGGAGAAAATAACACAAAAGGTTGAGGGGCAGCTATCAAAAT
CCCAAAAAGAATTTCTGTTGCGCCAGCAGATGAGGGCTATCAAAGACGAACTTGGTGATA
ATGATGATGATGAAGATGACATAGCTGCATTGGAAAGGAAGATGCAGAATGCAGGAATGC
CTGCTAATATTTGGAAGCATGCCCAAAGGGAGTTGAGACGCTTGAGGAAAATGCAACCTC
AGCAACCTGGATATAGTAGCTCTCGAGCTTATTTGGAACTTATTGCTGACCTTCCTTGGC
AAAAAGTAAGTGAAGAAAGGGAACTTGACCTTAGAGCTGCAAAGGAGAGTCTTGATCGTG
ATCATTACGGTCTGACCAAAGTTAAGCAAAGGATTATTGAGTATTTGGCTGTCCGTAAGC
TCAAACCGGATGCCAGAGGTCCAGTTCTATGTTTTGTGGGACCACCTGGTGTTGGAAAGA
CATCTTTGGCTACATCAATAGCAAAGGCCCTGAATAGGAAGTTCATAAGAATCTCTCTTG
GTGGCGTAAAGGATGAGGCTGATATTAGGGGCCATCGAAGGACATACATTGGAAGCATGC
CAGGACGCCTCATCGATGGACTAAAGAGGGTATCTGTCAGCAACCCAGTGATGCTCCTTG
ATGAAATTGACAAGACTGGTTCTGATGTACGTGGGGATCCAGCATCAGCACTGCTAGAAG
TACTTGACCCTGAGCAGAATAAAACATTCAATGACCACTATTTGAATGTTCCGTTTGACC
TGTCAAAGGTTGTGTTTGTTGCAACTGCCAACAGGATGCAACCTATCCCCCCTGCTCTGT
TAGATAGGATGGAAGTCATCGAACTACCAGGCTACACGCCTGAAGAAAAGCTGAAAATAG
CCATGAAACATCTCTTACCAAGGGTATTGGAACAGCATGGCTTGAGCTCAGCATATCTTC
AGATTCCTGAGGCTGTAGTCAAACTTATCATTGAGAGATACACACGGGAAGCTGGTGTGC
GTAATCTTGAAAGAAACCTAGCTGCATTGGCTCGTGCAGCTGCTGTTAAGGTTGCGGAGC
TAGATAGCACGCTTAGACTTGGCAAGGAAATGCAGCCAATAACTACAACTCTACTGGACT
CAAGGCTCACCGATGGTGGTGAAGTTGAAATGGAGGTTATTCCTATGGGCCAGGACATAT
CAAATACATATGAAAATCCATCTCCCATGATTATTGACGAGGCTGTGCTAGAAAAAGTGC
TTGGGCCCCCTAGATTTGATGACAGAGAAGCTGCGGATCGGGTGTCATCCCCAGGAGTGT
CAGTTGGGCTTGTCTGGACTTCTTTTGGTGGGGAAGTTCAATTTGTAGAGGCTACAGCCA
TGGTGGGTAAAGGTGACTTGCATCTGACAGGACAACTTGGCGATGTAATTAAGGAGTCAG
CACAGTTAGCTCTGACATGGGTGAGAGCAAGATCCGCTGACCTCAATCTGTCACCTACTT
CTGATATCAACATATTGGAGAGCCGTGATATTCACATACATTTTCCTGCTGGTGCTGTGC
CGAAGGATGGTCCTTCTGCAGGAGTGACATTGGTAACATCACTGGTGTCGTTGTTCAGTA
ACCGAAAAGTGAGAGCAGACACTGCAATGACCGGAGAGATGACTCTTAGGGGCCTAGTGT
TGCCAGTTGGTGGTGTTAAGGACAAGGTGCTTGCTGCACATCGATATGGCATCAAGAGGG
TGATATTACCAGAAAGAAACTTGAAGGACTTGGCTGAGATTCCAGCACCGATCCTCGCTG
GCATTGAGATTCTGCTCGTGAAGCGCATCGAGGAAGTACTTGGCCATGCTTTTGAGAATG
GATTCCCTTTGAGGCTACACTCCAGTCTATAGCACGGACAAATCCCAATTGGCGCCTGAT
GTAGTATTTCCTCGGTGGCCATGTACCTGTTTTGAAGATTCGTCGCTATTCACTGCCCAG
ATATCTACAAACGAGCGACTGAGCGTAGGCGAGCAATTGCTCCATCGGAGTGAAATCTCA
TGACGCCAGCATCGCTCGTCCAATTCAGTTAAGCTAATATGCGGAATGTGTATATGGGTA
CTTGCTATCCACAAAAGCGGCAGGGAGATCTGCTCCGGTCTTTGTGCTTGTATTTATAGA
GGGATGCTCATCTATCTATGCTCGGTTTGGTATTGGTAGCAAGGAGATCCACCTGTTGTT
GTCGGTTTGGGTGTATATGTAACCTATTTCAGCCAGGGAGAATTGAATGTTGCAGTATCA
TAAAAAAAGTGTCGATAGCACAAGTAATCATCATAGCATATAGAGTGAACAAACACGCTA
AGACGTGTCTATATACATCCGATTCAGAAAAAAAAAAAAAAAAA

Homology of Contig U35_14462 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	Description
Rice v7	LOC_Os09g36300.1	885	protein\|OsLonP4 - Putative Lon protease homologue, expressed
Brachypodium v1_2	Bradi4g36160.1	887
Arabidopsis v10	AT5G47040.1	888	\| Symbols: LON2 \| lon protease 2 \| chr5:19093356-19098678 REVERSE LENGTH=888