barSeed - Barley Seed Development Database

Probe CUST_5107_PI390587928

Source Contig U35_14466

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_5107_PI390587928	Hv_44K_v2	TGCGTGTTATCCTGAGATCTGAGTTCGTAATAATAAAATCCTTTCCTTCTGCGTAAAAAA	595	GeneList: brown MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	2.040	2.965	1.501	0.744	0.211	0.208
Raw	6118.950	14529.553	6246.013	5417.997	481.367	536.760

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
JLOC1	JLOC1_25178.1	773	1e-23	675 - 732	100	58 / 58	plus
Harvest21	ABC01613	667	3e-25	596 - 655	100	60 / 60	plus	ABC01613
Harvest35	U35_14466	667	3e-25	596 - 655	100	60 / 60	plus

Contig Sequence (667 bp)

>U35_14466 667 Hv_44K_v2
GGATCCCCCGGGCTGTTGGGGGTCGGCAGGCACAGCAGCGTCACACTACCTGCAAAACAA
GATGGCCAGCACCGGAGCCACCCTCCTCCGTGCCCTGCTGTTCGTGTCGCTCTTCGCCGG
GTTCGCGGCGCACCTCGCCGCGGCGGAGAAGGACTGCTACGACGAGAGGGACAGCGTCAT
GCGCATGTGCAAGTGGACCATCAAGAAGGGGAGCCCCTACGTGATCCCGGACATGCCCTG
CCGCCTCCAGGTGAGGAAGGTGGACATGCCCTGCATCTGCCGCGTCCTCACCGCCTCCGA
CGAGCGGATCGTCAGCCCCGAGAAGCTCGTCCGCTGCTCCCGCGACTCCGGCGTCGCCCT
CCCCGTCGGGAGCAAATGCGGGACTTACACCATCGTGGCGCCAGCGCCAGCGCCACCATC
CGCGCATGCGTGAGGAGTTCCTGTCACGGGATCGTGCGAGAGGAAGGCGAGGCCAGGGGA
GGACCGGAGGAGACGTTGTCAGGGGAGAATAACTGAATAAGTGCGCGCGTGTATGTACGC
TGAGCTATACTGAGCGTACTACCGTAGAATGTATTCTTGCCATTCTGCCATGGCATGCGT
GTTATCCTGAGATCTGAGTTCGTAATAATAAAATCCTTTCCTTCTGCGTAAAAAAAAAAA
AAAAAAA

Homology of Contig U35_14466 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None