- Probe CUST_5098_PI390587928
- Source Contig U35_26442
Probe Details
| Probe ID | Chip | Probe Sequence (60 bp) | Probe location | Differentially Expressed |
|---|---|---|---|---|
| CUST_5098_PI390587928 | Hv_44K_v2 | CCTCTCTTTTAGAATAAATGGGAATTGTTACTCAAGAACATGCCCCTAGTTTCCTTTTTT | 354 | GeneList: red MasterList: None |
Probe Values
| 3 dpa | 4 dpa | 5 dpa | 6 dpa | 7 dpa | 8 dpa | |
|---|---|---|---|---|---|---|
| Normalized | 1.282 | 2.730 | 2.655 | 1.431 | 0.107 | 0.029 |
| Raw | 273.801 | 979.910 | 791.467 | 690.352 | 18.213 | 2.975 |
Probe Sequence's BLAST hits in Barley Unigene Datasets
| Dataset | Hit | Hit Length | E-value | Position on Hit | % Identity | Match | Direction | Probes on Sequence |
|---|---|---|---|---|---|---|---|---|
| MLOC | MLOC_22387.1 | 521 | 2e-24 | 371 - 430 | 100 | 60 / 60 | plus | ABC21826 |
| JLOC1 | JLOC1_15519.1 | 513 | 8e-25 | 363 - 422 | 100 | 60 / 60 | plus | |
| Harvest21 | ABC21826 | 508 | 3e-25 | 355 - 414 | 100 | 60 / 60 | plus | ABC21826 |
| Harvest35 | U35_26442 | 508 | 3e-25 | 355 - 414 | 100 | 60 / 60 | plus |
Contig Sequence (508 bp)
>U35_26442 508 Hv_44K_v2 CTAGAGAAGACTTGTAATCGCCAAAGATCATGGCTAGGACAGCGGTGTCGGTGTGGGTGC TGGTCATGGTGGTTGTGGTGGCGGGTGCAATGGCGGCAAAGCCAGAGTGCCACCCGGAGA GCCTTACTTCTTGTGATTCGGCGAACAAGTACGGTATGTGGCCCTCGGTGTCGTGTTGCT GGAACCTCTTGGCGCAGAAACGGTGCATCTGCCGCTACTTGAACGATCCGAGGTACCAAC GCTACATCCAGGGGCCCTTCATCAAAAATACCATCCCCTCCTGCGGCATCCCCCTTCCAC ATTATTGTTTATAACTATAAATATATAATACAGTGGACAATATGTGTTAATGTACCTCTC TTTTAGAATAAATGGGAATTGTTACTCAAGAACATGCCCCTAGTTTCCTTTTTTTAGTTT GGTGTCTTTTAAATAGAAAATTAGAGGTAAATTTACACAAGTGATTGATCCTCACTAATG GTCATCTAATTAAGTTGTTTTTGTGTGC
Homology of Contig U35_26442 to Model Species (E-value threshold 1e-50)
| Pseudo-peptide dataset | Hit | Hit length | E-value | Description |
|---|---|---|---|---|
| Rice v7 | None | |||
| Brachypodium v1_2 | None | |||
| Arabidopsis v10 | None |