barSeed - Barley Seed Development Database

Probe CUST_5085_PI390587928

Source Contig U35_38421

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_5085_PI390587928	Hv_44K_v2	TTCTTGGATGAGCTTCGCCCACCCAACATTATTCTTGTACACGGAGAAGCAAATGAGATG	534	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_71240.2	2390	2e-24	1297 - 1356	100	60 / 60	plus	ABC11280
MLOC	MLOC_71240.1	2491	2e-24	1387 - 1446	100	60 / 60	plus	ABC11280
JLOC1	JLOC1_47326.1	2455	8e-25	1305 - 1364	100	60 / 60	plus
Harvest21	ABC34382	672	3e-25	535 - 594	100	60 / 60	plus
Harvest35	U35_38421	672	3e-25	535 - 594	100	60 / 60	plus

Contig Sequence (672 bp)

>U35_38421 672 Hv_44K_v2
GACGAGGCTGTTTCTAAGGGGGGCGTGTTCTTATCCCGGCATATGCTCTTGGTAGAGCAC
AGGAACTATTGCTTATCCTTGATGAGTATTGGTCTAACCACCCAGAGCTCCATAAGATTC
CAATCTATTACTGCCTCCCCTCTTGCGAAGAAGTGCATGGCTGTCTACCAGACATATATA
AACTCCATGAATGAAAGGATTAGGAACCAGTTTGCACAATCCAATCCCTTCCATTTTAAA
CATATTGAGCCTTTGAATAGCATAGACAACTTCCATGATGTGGGTCCGTCAGTGGTGATG
GCAAGCCCAGGTAGTCTCCAAAGTGGCCTCTCCAGGCAGCTCTTTGACAAGTGGTGCACG
GATAAGAAGAACACATGTGTTATTCCAGGTTTTGCTGTAGAAGGCTCCCTTGTGAAGACC
ATTATCAACGAGCCGAGGGAAGTGACGTTAGCAAATGGGCTCACTGCTCCTCTTCATATG
CAGATCTTCTACATCTCATTTTCAGCTCACGCCGATTTCCTACAGACAAGCGGCTTCTTG
GATGAGCTTCGCCCACCCAACATTATTCTTGTACACGGAGAAGCAAATGAGATGGGGAGG
CTTAAACAGAAACTTACTACTCAGTTTGATGGAACAAACACANAAATCGTGTCTCCTAAG
AACTGCCAATCA

Homology of Contig U35_38421 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os03g63590.1	701	6e-110	protein\|metallo-beta-lactamase, putative, expressed
Brachypodium v1_2	Bradi1g01200.1	691	2e-117
Arabidopsis v10	AT1G61010.1	693	4e-98	\| Symbols: CPSF73-I \| cleavage and polyadenylation specificity factor 73-I \| chr1:22474954-22477660 REVERSE LENGTH=693