- Probe CUST_5084_PI390587928
- Source Contig U35_38422
Probe Details
| Probe ID | Chip | Probe Sequence (60 bp) | Probe location | Differentially Expressed |
|---|---|---|---|---|
| CUST_5084_PI390587928 | Hv_44K_v2 | ATTCTTCGAAGAGGTTTCCAAGTTTGCGCATCTGAGTAACGGCAGAGTGCGGATTGAATA | 524 | GeneList: lightcyan MasterList: None |
Probe Values
| 3 dpa | 4 dpa | 5 dpa | 6 dpa | 7 dpa | 8 dpa | |
|---|---|---|---|---|---|---|
| Normalized | 1.026 | 1.164 | 1.882 | 1.344 | 0.436 | 0.420 |
| Raw | 280.762 | 507.220 | 697.176 | 807.248 | 90.223 | 95.125 |
Probe Sequence's BLAST hits in Barley Unigene Datasets
| Dataset | Hit | Hit Length | E-value | Position on Hit | % Identity | Match | Direction | Probes on Sequence |
|---|---|---|---|---|---|---|---|---|
| MLOC | AK374028 | 1515 | 2e-24 | 1204 - 1263 | 100 | 60 / 60 | plus | None |
| MLOC | MLOC_76229.3 | 789 | 7e-23 | 550 - 609 | 98 | 59 / 60 | plus | None |
| MLOC | MLOC_76229.1 | 1050 | 7e-23 | 981 - 1040 | 98 | 59 / 60 | plus | None |
| MLOC | MLOC_76229.2 | 1182 | 7e-23 | 863 - 922 | 98 | 59 / 60 | plus | None |
| JLOC1 | JLOC1_50832.1 | 1176 | 4e-23 | 857 - 916 | 98 | 59 / 60 | plus | |
| Harvest21 | ABC34383 | 584 | 3e-25 | 525 - 584 | 100 | 60 / 60 | plus | |
| Harvest35 | U35_38422 | 584 | 3e-25 | 525 - 584 | 100 | 60 / 60 | plus |
Contig Sequence (584 bp)
>U35_38422 584 Hv_44K_v2 GGTTTCAGCTATATCACCCTGCAAGGCGGCGACCGCCTGAAACGCCTCACAATTTCCAAG AACACTGGGAGGGTGAATACTGTCGGGATAGACAGGCTCCCGGTGCTAGAGCAGCTGTCA CTGCGTGGTGTCCAGTGGAGCTGGGGAGCCGTCAGCCATGTGCTGCAATGCGGCGCCGAG GCGAAGCATCTGGTGATGAAGGTCGAGTTCTGCGGCGATTCTGATACTCTCCAGCCGTTT CCGGAGGTCGACCTTGTTGAATTCTTCAACAGCCACCCAAAGCTTTGCAAGTTTGAGGTC CACGGCGCCATGTTTGCGTCGCTCTGCCAAAAGAACAGCCTGAAAAACTTGGACTCGAGG TTCTTGATATCTTCATTGGAGGAGGTCCTGATTACAGTGCGCTCACCCTTGAATGCTGAG CAGAAGCTGATCACCATTGAGTCCCTTGTCAGGTACAGCCCAAGGCTGCGGAGGATGGTC CTTAGGATCTCGCAGATGAAGAACTGCCATGAGGCTGCAGATGAATTCTTCGAAGAGGTT TCCAAGTTTGCGCATCTGAGTAACGGCAGAGTGCGGATTGAATA
Homology of Contig U35_38422 to Model Species (E-value threshold 1e-50)
| Pseudo-peptide dataset | Hit | Hit length | E-value | Description |
|---|---|---|---|---|
| Rice v7 | LOC_Os08g36570.1 | 430 | 1e-99 | protein|F-box protein, putative, expressed |
| Brachypodium v1_2 | Bradi1g68607.1 | 423 | 4e-110 | |
| Arabidopsis v10 | AT1G10780.1 | 418 | 7e-68 | F-box/RNI-like superfamily protein | chr1:3592875-3594310 REVERSE LENGTH=418 |