barSeed - Barley Seed Development Database

Probe CUST_5081_PI390587928

Source Contig U35_38425

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_5081_PI390587928	Hv_44K_v2	TCTTAGTGCTATCGAGTGGCAAATCACAGTCATAGAAAGTCTAATTCATGAATTGAAGCA	645	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK364552	2254	2e-24	1733 - 1792	100	60 / 60	plus	ABC30225
MLOC	MLOC_15175.1	1823	2e-24	1121 - 1180	100	60 / 60	plus	ABC30225
JLOC1	JLOC1_10394.1	1715	8e-25	1110 - 1169	100	60 / 60	plus
Harvest21	ABC34386	705	3e-25	646 - 705	100	60 / 60	plus
Harvest35	U35_38425	705	3e-25	646 - 705	100	60 / 60	plus

Contig Sequence (705 bp)

>U35_38425 705 Hv_44K_v2
CGCGTGCGCCGCCCGCCCGCGTCGCTGGTCTACCTCCACGCCGTCAGATCCCTCTCCCGC
CAGATGAAGGCCACGGGCGTGGTCCCCGACACCTATCTGCTCAACCTAATCATCAAGGCG
TATGGGCGCTGCCTTGAGGTAGACGACGCCCTCAAGGTGTTCCGGGAAATGCCCTTGTAT
AGCTGTGAGCCAAATGAGTTCACCTATGGCTACATTGTCAAGGCCATGTTCCAGAAGGGC
AGGACCGATAACGGGTTGGCGTATTTGAAGGAGATGAGGGAGAAGGGGTTCGTGCCGAGC
GGCGGCGTGTACATGTCAGCGGTGGCTGCGCTGGCACTGGAATGGAGGTTCGAAGAATCC
AGAGAGGTGCTTTTGGATATGCTGGATAGCAAGAGGAAGCCAGATATGATCACTTACAGG
ACTCTGCTGGAGGAGCTGTGCCGAGCTACACGGACAGAGGATGCGTTCCAGTTGCTGGAG
GAGCTGAAAGAGAGGAAGCGAGGAGCATTGGACCAGAGGATGTACTCAGAATTGCTCGAT
GGGCTGCACTGGATTTCTCAGCCACAACAGAATAGTCTTCCTCGCCGTGACAGGGGCTCT
GATGATAGGGGTTCTGATGACTGAAATTCTTCGATGAATTGCATGTCTTAGTGCTATCGA
GTGGCAAATCACAGTCATAGAAAGTCTAATTCATGAATTGAAGCA

Homology of Contig U35_38425 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os06g08570.1	389	5e-116	protein\|PPR repeat domain containing protein, putative, expressed
Brachypodium v1_2	Bradi1g47260.1	502	3e-122
Arabidopsis v10	AT3G25210.1	379	2e-58	Tetratricopeptide repeat (TPR)-like superfamily protein \| chr3:9180348-9181487 FORWARD LENGTH=379