- Probe CUST_5080_PI390587928
- Source Contig U35_38427
Probe Details
| Probe ID | Chip | Probe Sequence (60 bp) | Probe location | Differentially Expressed |
|---|---|---|---|---|
| CUST_5080_PI390587928 | Hv_44K_v2 | ATGGTCAGCAGTCCAACGAGTTGTACTACGGCAGCCCATACCATGTTAGCGTGGAGCAGC | 438 | GeneList: black MasterList: Hordein_Function_Probe_Module |
Probe Values
| 3 dpa | 4 dpa | 5 dpa | 6 dpa | 7 dpa | 8 dpa | |
|---|---|---|---|---|---|---|
| Normalized | 0.010 | 0.010 | 0.252 | 1.770 | 3.223 | 4.254 |
| Raw | 13.798 | 19.734 | 1200.483 | 12089.780 | 8046.680 | 11496.930 |
Probe Sequence's BLAST hits in Barley Unigene Datasets
| Dataset | Hit | Hit Length | E-value | Position on Hit | % Identity | Match | Direction | Probes on Sequence |
|---|---|---|---|---|---|---|---|---|
| MLOC | AK373042 | 2382 | 2e-24 | 2147 - 2206 | 100 | 60 / 60 | plus | ABC01278 ABC01281 ABC43458 |
| MLOC | MLOC_13434.5 | 2472 | 2e-24 | 2274 - 2333 | 100 | 60 / 60 | minus | ABC01278 ABC01281 ABC43458 |
| MLOC | MLOC_13434.4 | 3672 | 2e-24 | 3474 - 3533 | 100 | 60 / 60 | minus | ABC01278 ABC01281 ABC43458 |
| JLOC1 | JLOC1_9094.3 | 1410 | 8e-25 | 1212 - 1271 | 100 | 60 / 60 | minus | |
| JLOC1 | JLOC1_9095.2 | 2603 | 8e-25 | 140 - 199 | 100 | 60 / 60 | plus | |
| JLOC1 | JLOC1_9095.1 | 2607 | 8e-25 | 140 - 199 | 100 | 60 / 60 | plus | |
| JLOC1 | JLOC1_9094.2 | 1846 | 8e-25 | 1648 - 1707 | 100 | 60 / 60 | minus | |
| JLOC1 | JLOC1_9094.1 | 1925 | 8e-25 | 1727 - 1786 | 100 | 60 / 60 | minus | |
| Harvest21 | ABC48347 | 321 | 3e-25 | 247 - 306 | 100 | 60 / 60 | minus | |
| Harvest21 | ABC01284 | 2742 | 3e-25 | 2404 - 2463 | 100 | 60 / 60 | plus | |
| Harvest21 | ABC01282 | 396 | 3e-25 | 168 - 227 | 100 | 60 / 60 | plus | |
| Harvest21 | ABC01281 | 2660 | 3e-25 | 2131 - 2190 | 100 | 60 / 60 | plus | ABC01281 |
| Harvest21 | ABC01280 | 369 | 3e-25 | 73 - 132 | 100 | 60 / 60 | plus | |
| Harvest21 | ABC01278 | 753 | 3e-25 | 256 - 315 | 100 | 60 / 60 | minus | ABC01278 |
| Harvest21 | ABC01277 | 866 | 3e-25 | 619 - 678 | 100 | 60 / 60 | plus | |
| Harvest21 | ABC01273 | 1735 | 3e-25 | 1448 - 1507 | 100 | 60 / 60 | plus | |
| Harvest21 | ABC43458 | 333 | 1e-23 | 236 - 295 | 98 | 59 / 60 | minus | ABC43458 |
| Harvest35 | U35_47358 | 321 | 3e-25 | 247 - 306 | 100 | 60 / 60 | minus | |
| Harvest35 | U35_38427 | 638 | 3e-25 | 439 - 498 | 100 | 60 / 60 | plus | |
| Harvest35 | U35_14221 | 2694 | 3e-25 | 2398 - 2457 | 100 | 60 / 60 | plus | |
| Harvest35 | U35_14219 | 2471 | 3e-25 | 2131 - 2190 | 100 | 60 / 60 | plus | |
| Harvest35 | U35_14213 | 1735 | 3e-25 | 1448 - 1507 | 100 | 60 / 60 | plus |
Contig Sequence (638 bp)
>U35_38427 638 Hv_44K_v2 GGTTAACGACGGAGCAACCGCAGGGAGGAAAGCAGCCATTCCATTGCCAGCAAACCACTG TCTCCCCTCACCAGGGTCAGCAAACCACCGTCTCCCCTCACCAGGGTCAGCAAACCACCG TCTCCCCTCATCAGGGTCAGCAAACCACTGTCTCCCCTCATCCGGGTCAGCAAACCACTG TCTCCCCTCATCAGGGTCAGCAAACCACTGTCTCCCCTCATCCGGGTCAGCAAACCACTG TCTCCCCTCATCAGGGTCAGCAAACCACTGTCTCCCCTCATCAGGGTCAGCAAACCACCG TCTCCCCTCATCAGGGTCAGCAAACCACCGTCTCCCCTCATCAGGGTCAGCAAACCACCG TCTCCCCTCATCAGGGTCAGCAGCCCGGCGAGCAGCCTTGCGGTTTCCCTGGCCAGCAAA CCACCGTGTCTCTGCACCATGGTCAGCAGTCCAACGAGTTGTACTACGGCAGCCCATACC ATGTTAGCGTGGAGCAGCCGTCGGCCAGCCTAAAGGTAGCAAAGGCGCAGCAGCTCGCGG CGCAGCTGCCGGCAATGTGTCGGCTGGAGGGCGGCGGCGGCCTGTTGGCCAGCCAGTAGT AGAACTCTGGCAGCTCGCATGGTGCTTGGGCATGCATG
Homology of Contig U35_38427 to Model Species (E-value threshold 1e-50)
| Pseudo-peptide dataset | Hit | Hit length | E-value | Description |
|---|---|---|---|---|
| Rice v7 | None | |||
| Brachypodium v1_2 | None | |||
| Arabidopsis v10 | None |