barSeed - Barley Seed Development Database

Probe CUST_5077_PI390587928

Source Contig U35_14470

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_5077_PI390587928	Hv_44K_v2	TATATAGCCGGATGGATTCGCATCGGAATTTATGTGAAGAAAAGATGATGCAGTTTTATC	2313	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_55999.1	2532	2e-24	63 - 122	100	60 / 60	minus	ABC01615 ABC49394
JLOC1	JLOC1_36176.1	2683	8e-25	2459 - 2518	100	60 / 60	plus
Harvest21	ABC01615	1474	3e-25	1094 - 1153	100	60 / 60	plus	ABC01615
Harvest21	ABC01610	2375	3e-25	2296 - 2355	100	60 / 60	plus
Harvest35	U35_14470	2463	3e-25	2314 - 2373	100	60 / 60	plus

Contig Sequence (2463 bp)

>U35_14470 2463 Hv_44K_v2
AAATCTCAACCCCACTTCCCGCAGACGAGATCGACAGAGGCGAAGCCGCCGGAGAGGAGG
AAGAAGAAGCTCCAGACGAGGCGAGGAGAGGAGAGGGATCGGCGTCGTGGCGATGGATCG
GGCCCGCGGCTCCGCGCTGCTGCTCGGCGTCCTGCTCGCAGGTTCGCTGTTTGCACTTTG
TGCCGCGAAGGAGGAGGCCAAGAAGCTCGGTACCGTGATCGGTATCGATCTCGGTACCAC
CTACTCATGTGTCGGTGTGTACAAGAACGGTCATGTCGAGATTATCGCCAATGACCAGGG
TAACCGTATCACGCCCTCATGGGTTGGGTTCACCGATGGGGAGAGGCTCATCGGTGAGGC
TGCCAAGAACCAGGCGGCGGTCAACCCCGAGAGGACCGTTTTTGACGTCAAGCGTCTCAT
TGGAAGAAAGTTTGAGGACAAGGAGGTGCAGAGGGACATGAGACTTGTCCCCTACAAGAT
TGTCAACAAGGAGGGCAAGCCTTACATTCAGGTCAAGATCAAGGATGGGGAGACCAAGGT
CTTCAGCCCTGAGGAGGTCAGTGCTATGATTCTTGGAAAGATGAAGGAGACTGCTGAGGC
ATACCTTGGCAAGAAGATCAATGACGCCGTCGTCACTGTTCCTGCGTACTTCAATGACGC
GCAGAGGCAGGCGACCAAGGATGCTGGTGTGATTGCTGGCCTCAATGTGGCTAGGATCAT
CAATGAGCCCACTGCTGCTGCTATTGCCTACGGTTTGGACAAGAGGGGTGGTGAGAAGAA
CATCCTGGTGTTTGACCTTGGTGGTGGTACTTTTGATGTCAGTATCTTGACCATTGACAA
TGGTGTCTTTGAGGTGTTGGCCACCAACGGTGACACCCATCTTGGAGGTGAGGACTTTGA
CCACAGAATCATGGATTACTTCATCAAGTTGATCAAGAAGAAGCACGGCAAGGACATCAG
CAAGGACAACCGTGCTCTTGGAAAGCTGAGGAGGGAAGCTGAGCGTGCCAAGAGAGCCCT
CAGCAACCAGCACCAGGTCCGCGTTGAGATCGAGTCCCTCTTTGACGGGACTGATTTCTC
GGAGCCACTGACCCGTGCGAGGTTCGAGGAGCTGAACAACGATCTTTTCCGCAAGACCAT
GGGACCGGTGAAGAAGGCCATGGATGACGCTGGCCTCGAGAAGACCCAGATCCATGAGAT
TGTTCTTGTTGGTGGAAGCACCAGGATTCCCAAGGTCCAGCAGCTCCTCAGGGACTACTT
CGACGGCAAGGAGCCGAACAAGGGTGTGAACCCTGATGAGGCTGTTGCCTTCGGAGCTGC
AGTGCAGGGAAGCATCTTGAGCGGTGAGGGCGGTGACGAGACCAAAGATATCCTTCTCCT
TGATGTGGCGCCCCTCACCCTCGGTATCGAGACTGTTGGAGGAGTCATGACCAAGCTGAT
CCCCAGGAACACTGTCATCCCCACCAAGAAGTCGCAGGTTTTCACCACCTACCAGGACCA
GCAGACCACCGTCTCCATCCAGGTCTTTGAGGGTGAGCGTAGCATGACCAAGGACTGCCG
TCTTCTCGGCAAGTTTGACCTTTCTGGCATTCCCGCAGCTCCAAGGGGCACTCCACAGAT
TGAGGTGACCTTCGAGGTTGACGCCAACGGTATCCTGAACGTGAAGGCGGAGGACAAGGG
CACGGGCAAGTCTGAGAAGATCACCATCACGAACGAGAAGGGGCGCCTGAGCCAGGAGGA
GATCGACCGGATGGTCAAGGAGGCGGAGGAGTTTGCCGAGGAGGACAAGAAGGTGAAGGA
GCGCATCGACGCCCGGAACCAGCTGGAGACGTACGTGTACAACATGAAGAACACGGTGGG
CGACAAGGACAAGCTTGCGGACAAGCTGGAGAGCGAGGAGAAGGAGAAGGTGGAGGAGGC
CCTGAAGGAGGCGCTCGAGTGGCTGGACGAGAACCAGACGGCCGAGAAGGAGGACTACGA
GGAGAAGCTCAAGGAGGTGGAGGCCGTGTGCAACCCCATCGTGTCGGCCGTGTACCAGAG
GTCCGGCGGCGCGCCTGGAGGCGAGGGCGCCGACGGCGGCGTCGACGACGAGGACCATGA
CGAGCTGTAGATTTGCTTTGGAAGGGGGAGCCAATTTTTGTAACGGGTTAGTAGGGGAGG
GGAGACATGGATAATTGCTACTGCTGCTTACTTTGGGGTTTGGGGTGGTCGGGTTTATTC
GCAGATACTTGAGACTACTGTTCTTAGTCTGTTGTCCGAGTTGTAGAGAACTCTTTGCTT
CTACTTCCTTCTGATGTTTTTTCGTTTTGTTATTATATAGCCGGATGGATTCGCATCGGA
ATTTATGTGAAGAAAAGATGATGCAGTTTTATCTAAAAAAAAAAAAAAAAAAACTTTTTT
TTTGGTCGTCGTACTTTGAGAAATGAAGCCCAGCTGAATTTATCAATAAAAAAAAAAAAA
AAG

Homology of Contig U35_14470 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	Description
Rice v7	LOC_Os02g02410.1	666	protein\|DnaK family protein, putative, expressed
Brachypodium v1_2	Bradi3g01477.1	666
Arabidopsis v10	AT5G28540.1	669	\| Symbols: BIP1 \| heat shock protein 70 (Hsp 70) family protein \| chr5:10540665-10543274 REVERSE LENGTH=669