barSeed - Barley Seed Development Database

Probe CUST_506_PI390587928

Source Contig U35_6914

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_506_PI390587928	Hv_44K_v2	AATGCCTTGTGCTAGTAAGATGACGTATATATTCTGTTCACGAATGCTTGACAGAAATAT	608	GeneList: blue MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	1.629	1.400	1.222	0.889	0.286	0.407
Raw	320.255	441.382	328.809	384.143	42.446	66.058

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_65731.1	2412	2e-24	2280 - 2339	100	60 / 60	plus	ABC21895
JLOC1	JLOC1_43272.2	2430	8e-25	2166 - 2225	100	60 / 60	plus
JLOC1	JLOC1_43272.1	2318	8e-25	2054 - 2113	100	60 / 60	plus
Harvest21	ABC21895	631	1e-23	35 - 95	98	60 / 61	minus	ABC21895
Harvest35	U35_6914	743	3e-25	609 - 668	100	60 / 60	plus

Contig Sequence (743 bp)

>U35_6914 743 Hv_44K_v2
TTTGAAGGTTCACCCCACATGCCCCGTTCCGACAACGGGTCTCCAAGCTATTATCCTGGC
TCTTCAGGGCAGCAGTACCCTTACTTGAGGCATCGCACGGAGTCAGGGCCGAGCTTATTT
ACGATGGTGCCCCAGTCACCGCAACAGACCCAGCTGCAGGGTGGCGACGACTCAGCGACG
AGTCTATCAGCTTCAGCATCGACTCAGTCGCTCCCTCAGGCCTACCTGCAGCATTGCTCC
GATTCTGATGCGAGCTTATCTGCTGCGACGTCAGCTCAGTCGCTGCCAGGGTGTTGATTG
CCCGTACAGGTTCACCATTGAAATCCAGTTACACCTGTTACCATAGAATAAGCTCTCCAT
GAAGCGTTCAGAGGCGGCCACTATCGACTGAAGCGGATTTGAATGAGCAAGAGGGAGGTG
CCTGTAAAAAGATAATAGAACCGGTGACCTTTAATCTGACCAACTAGCTGGGAACCTTGA
AGGCTGGAAATGACTCCGCTGACCACACTGAGTGTGCAAGGATTGTCTTGAGGCGTGTGT
GCTACTGATGATGCCAAGAGTGTATATTATTGCAGTTTGATAGGGATCTACTGTTAGTTG
CAGTCAGAAATGCCTTGTGCTAGTAAGATGACGTATATATTCTGTTCACGAATGCTTGAC
AGAAATATATTAATCTTGAATCTTGATTGTTCTCACTTTGTTTTAAAGGTTTTATCTATC
GGTGCCAAAAAAAAAAAAAAAAA

Homology of Contig U35_6914 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None