barSeed - Barley Seed Development Database

Probe CUST_5067_PI390587928

Source Contig U35_14479

barSeed

Links

Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_5067_PI390587928	Hv_44K_v2	AATCATCTTTTCAATGGCTCGTCTTGACCGCGTGAAGAACATGACTGGCTTGGTTGAGAT	1807	GeneList: saddlebrown MasterList: Sucrose_synthase_Function_Probe_Module

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	0.064	0.076	0.792	1.955	1.785	1.678
Raw	333.984	508.483	5775.680	21969.423	7089.110	7257.467

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK248622.1	3217	2e-24	2288 - 2347	100	60 / 60	plus	ABC00361 ABC00460 ABC00689 ABC00861 ABC04054 ABC04056 ABC37458
MLOC	MLOC_11770.3	2806	2e-24	1918 - 1977	100	60 / 60	plus	ABC00361 ABC00460 ABC00689 ABC00861 ABC37458
MLOC	MLOC_11770.4	2828	2e-24	1923 - 1982	100	60 / 60	plus	ABC00361 ABC00460 ABC00689 ABC00861 ABC37458
MLOC	MLOC_11770.2	4062	2e-24	3174 - 3233	100	60 / 60	plus	ABC00361 ABC00460 ABC00689 ABC00861 ABC37458
MLOC	MLOC_11770.1	3004	2e-24	1955 - 2014	100	60 / 60	plus	ABC00361 ABC00460 ABC00689 ABC00861 ABC29347 ABC37458
JLOC1	JLOC1_7835.2	3730	8e-25	2520 - 2579	100	60 / 60	plus
JLOC1	JLOC1_7835.1	3174	8e-25	1964 - 2023	100	60 / 60	plus
Harvest21	ABC00554	788	3e-25	88 - 147	100	60 / 60	plus
Harvest21	ABC00460	2849	3e-25	1749 - 1808	100	60 / 60	plus	ABC00460
Harvest35	U35_14484	1740	3e-25	622 - 681	100	60 / 60	plus
Harvest35	U35_14479	1896	3e-25	1808 - 1867	100	60 / 60	plus

Contig Sequence (1896 bp)

>U35_14479 1896 Hv_44K_v2
ACATTCATCACAGCCCCGTCATCTCCTCTCATCTCCTCTGTCACACAAAGCCATTGTTCC
GTTCTCCCGTCCGGCGTGTCCGCGCTAGTTTTGTGTCCTGAGCCATGGCTGCCAAGCTGA
CTCGCCTCCACAGCCTCAGGGAGCGCCTTGGTGCCACCTTCTCCTCCCATCCCAATGAGC
TCATTGCTCTCTTTTCCAGGTATGTTCACCAGGGCAAAGGCATGCTTCAGCGCCACCAGC
TGCTCGCTGAGTTTGACGCCCTGTTCGAATCCGACAAGGAGAAGTATGCTCCTTTTGAAG
ACATCCTCCGTGCTGCCCAGGAAGCAATTGTGCTGCCCCCATGGGTTGCACTTGCCATCA
GGCCCAGGCCTGGTGTCTGGGACTACATTCGGGTGAATGTTAGCGAGTTGGCTGTGGAAG
AGCTGACTGTTTCTGAGTACTTGGCATTCAAGGAGCAGCTTGTTGATGAGCATGCCAGCA
GCAAATTTGTGCTTGAGCTTGATTTTGAGCCTTTCAATGCCTCGTTCCCACGCCCTTCCA
TGTCCAAGTCCATCGGAAACGGGGTGCAGTTCCTTAACCGTCACCTGTCTTCCAAGTTGT
TCCAGGACAAGGAGAGCCTCTACCCACTGCTCAACTTCCTGAAAGCCCATAACTACAAGG
GCACGACAATGATGTTGAACGACAGAATTCAGAGCCTTCGTGGTCTCCAGTCAGCCCTTA
GGAAGGCAGAAGAGTATCTAGTTAGCATCCCTGAAGACACTCCCAGCTCTGAATTCAACC
ACAGGTTCCAAGAGCTTGGTTTGGAGAAGGGTTGGGGTGACACCGCAAAGCGTGTACACG
ACACCATCCATTTGCTTCTGGACCTTCTTGAGGCCCCTGACCCTGCCAGCTTGGAGAAGT
TCCTTGGAACTATTCCGATGATGTTCAATGTTGTCATCCTGTCTCCCCATGGATACTTTG
CTCAATCCAATGTGTTGGGATACCCTGATACCGGTGGCCAGGTTGTGTACATCTTGGATC
AAGTCCGTGCTTTGGAGAATGAGATGCTTCTGAGGATTAAGCAGCAAGGCCTTGACATAA
CTCCTAAGATCCTCATCGTAACCAGGTTGTTGCCTGATGCTGTTGGAACTACATGTGGCC
AGCGGCTGGAGAAGGTCATTGGAACTGAGCACACTGACATTCTCCGTGTTCCCTTTAGAA
CCGAGAATGGGATCCTCCGTAAGTGGATCTCGCGTTTCGATGTCTGGCCATACCTGGAGA
CATACACCGAGGATGTTGCAAACGAACTCATGAGGGAAATGCAGACCAAGCCTGATTTGA
TCATTGGCAACTACAGTGATGGTAACCTTGTGGCCACTCTGCTTGCCCATAAATTGGGTG
TTACCCAGTGCACCATTGCCCATGCCTTGGAGAAAACCAAGTACCCCAACTCAGACATAT
ACTTGGACAAATTCGACAGCCAGTATCACTTTTCATGCCAGTTCACAGCTGACCTGATTG
CCATGAACCACACTGATTTCATCATTACCAGCACATTCCAGGAAATTGCTGGAAGCAAGG
ATAGCGTGGGTCAATATGAGTCTCACATTGCTTTCACCCTCCCTGATCTGTACCGGGTTG
TCCATGGGATTGACGTGTTTGATCCTAAGTTCAACATTGTCTCTCCTGGAGCAGACATGA
CTGTCTACTTCCCATATACCGAGACTGACAAGAGGCTCACCGCCTTCCACTCTGAAATTG
AGGAGCTCCTGTACAGCGATGTTGAGAACGATGAACACAAATTTGTGTTGAAGGACAGGA
ACAAGCCAATCATCTTTTCAATGGCTCGTCTTGACCGCGTGAAGAACATGACTGGCTTGG
TTGAGATGTACGGAAAGAACGCACATCTGAAGGACT

Homology of Contig U35_14479 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	Description
Rice v7	LOC_Os06g09450.3	809	protein\|sucrose synthase, putative, expressed
Brachypodium v1_2	Bradi1g46670.3	748
Arabidopsis v10	AT3G43190.1	808	\| Symbols: SUS4, ATSUS4 \| sucrose synthase 4 \| chr3:15179204-15182577 REVERSE LENGTH=808