barSeed - Barley Seed Development Database

Probe CUST_5063_PI390587928

Source Contig U35_26451

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_5063_PI390587928	Hv_44K_v2	AACGAGGAAATGGATGACGAAGAGTTAGATTTAGTTTCTTTCAAAGATAAGCGAGAACTA	496	GeneList: darkturquoise MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	0.365	0.759	1.082	1.537	0.920	1.109
Raw	39.194	134.863	159.453	344.749	74.654	98.137

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_59531.2	2163	2e-24	2065 - 2124	100	60 / 60	plus	ABC25611
MLOC	MLOC_59531.1	1976	2e-24	1866 - 1925	100	60 / 60	plus	ABC25611
JLOC1	JLOC1_38744.2	2464	8e-25	2056 - 2115	100	60 / 60	plus
JLOC1	JLOC1_38744.1	2282	8e-25	1874 - 1933	100	60 / 60	plus
Harvest21	ABC25611	680	3e-25	125 - 184	100	60 / 60	minus	ABC25611
Harvest35	U35_26451	680	3e-25	497 - 556	100	60 / 60	plus

Contig Sequence (680 bp)

>U35_26451 680 Hv_44K_v2
GCCAAATGTTGTTGCTTATGGAACTCTGATGAAAGGTTACTCGAAGTTGGATGATGTTGA
GAAAGTAATGCGGGTTTATGAGCGAATGCGGATGCAGGGTGTTGAGCCCAATCAAACCAT
CTTTACCACCATCATGGATGTACATGGCAGGAACTCAGATTTCGGAAACGCTGTCATTTG
GTTCAACGAAATGGAAACACGTGGATACCCACCAGACAAGAAAGCGAAGAACATCCTGCT
TTCTCTCGCTAAAACACCTGAAGAACAAGAAGAAGCGAATGAGTTGACGGGGAACGGTGT
GGTTCAGCTTGAAGTAAAACCCAATGGCATGCCCGCCGGTTTAGGTACCAATGGTGCTGC
TGGCGTCCATGAAGCTGGGCTAACTGATACTGCACGCCATGACTCCTTAAATGGCGCATC
CACAAGTGATCTAAATGGTGGAAACAGGGCCAGGAGCAGTGGTTTTGAGGATGAAGATGA
CGATGATGACGATTACAACGAGGAAATGGATGACGAAGAGTTAGATTTAGTTTCTTTCAA
AGATAAGCGAGAACTAAATTTTGCGACTTGATATGTCTAAAGCATTGGTGTATATTTTTT
TGCTGCAAAACTTATGATAGATTTTCCTATAAAAAAGGACTTTGTGGTATTCTCGAAATA
TGGTCAATACATTGCCTAGG

Homology of Contig U35_26451 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os08g09270.1	610	2e-72	protein\|pentatricopeptide, putative, expressed
Brachypodium v1_2	Bradi3g14950.1	607	6e-85
Arabidopsis v10	None