barSeed - Barley Seed Development Database

Probe CUST_505_PI415269222

Source Contig TA35125_4513

barSeed

Links

Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_505_PI415269222	Hv_44K_v2	AACCAAAAACCTGAGCCAATCGCCGAAAGGCACTTTGGCCTCTTCAACCCGGACTTCACG	959	GeneList: turquoise MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	1.558	1.686	1.390	0.685	0.252	0.115
Raw	110.778	190.064	133.223	103.061	14.032	5.768

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_20723.1	1909	7e-23	1082 - 1141	98	59 / 60	plus	ABC06967
JLOC1	JLOC1_14366.1	2291	4e-23	1155 - 1214	98	59 / 60	plus
Harvest21	ABC06967	1756	1e-23	974 - 1033	98	59 / 60	plus	ABC06967
Harvest35	U35_17424	1756	1e-23	974 - 1033	98	59 / 60	plus

Contig Sequence (1149 bp)

>TA35125_4513 1149 Hv_44K_v2
GCCGCTCCTCCTCCTCCTCCTGAAGCTGCTCGCCGCCGGCGCGGCGGGGGCAGNAGTCGG
CGACCCCTTCGCTTCCCATCGGCGTCAACTACGGCGCAAACGCCGACAACCTCCCCTCCC
CGACCTCCGTCGCCACCTTCCTCGCCACCAAGACCACCATCAACCGCGTCAAGCTCTTCG
ATGCCAACCCGGTCTTCATCTCCGCCTTTGCCGGCACGCCCATCTCCCTCGTCGTCTCCC
TCCCCAACTCCGCCCTCCCCGCCCTCGCCGACAAGGCCACCGGCCTCGACGCCGCGCGGT
CCTGGATCCGCGCGAACCTTTCCCCCTACGTCCCCGCCACCAACGTCACCCTCCTCCTCG
CCGGCAACGAGATCCTCCTCTCCACCGACACCAACCTCATCCTCTCCCTCCTCCCCGCCA
TGCGCCGCCTTGCGCAGGCCCTCAAGGCCGAGGGCCTCACCGGCGTCCGCGTCACCACCC
CGCACTACCTCGGCATCCTCGCCCCCTCGGACGGCATCCCCTCCAACGCCACATTCCGGG
CGGGTTACAACACCAAGCTGTTCCCGGCCTTGCTCCAGTTCCACCGCGACACCGGGTCGC
CCTTCATGGTGAACCCTTACCCCTACTTCAGCTACCGGCCGGAGACGCTCAACTACGCGC
TCTTCCGCCCCAACAGCGGCATCTACGACCCCGCAACGAAGCTCAACTACACCAGCATGT
TCGATGCCCAGATGGACGCAATCTACACCGCCATGAAGAAGCTCGGCTACGGAGACGTCG
ACATCGCCGTCGGGGAGGCCGGATGGCCCACCCAGGCCGAGCCCGGGCAGATTGGCGTCG
GGGTGCAGGAGGCGAGGGACTTCAACGAGGGCATGATTCGGGTGTGCAGCAGCGGGAAGG
GCACGCCGCTCATGCACAACAGGACATTCGAGACCTACCTCTTCTCCCTCTTCGACGAGA
ACCAAAAACCTGAGCCAATCGCCGAAAGGCACTTTGGCCTCTTCAACCCGGACTTCACGC
ACGTCTACGACCTCGGACTCCTACGGGACGGCTCGGGTCTTGGTCCAACCACTTCACCCA
ATCCGAGCCCTAAGCCCTTGCCCGTCGGGACGCGGGAAGTGGTGCGTTTGCCAAGGACGG
CGGCCACCG

Homology of Contig TA35125_4513 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os11g47820.1	473	0.0	protein\|glucan endo-1,3-beta-glucosidase precursor, putative, expressed
Brachypodium v1_2	Bradi4g09230.2	473	0.0
Arabidopsis v10	AT3G46570.1	356	9e-113	Glycosyl hydrolase superfamily protein \| chr3:17145797-17146867 REVERSE LENGTH=356