barSeed - Barley Seed Development Database

Probe CUST_5059_PI390587928

Source Contig U35_26453

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_5059_PI390587928	Hv_44K_v2	AGACACTATGCATCAGAAACAGACTAATCAGAAAAATACTGCCAGTCAGTCACGTTCGAG	1121	GeneList: turquoise MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	1.212	1.163	1.599	0.740	0.373	0.421
Raw	23.934	34.444	43.531	27.726	4.856	6.933

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_62319.5	4068	7e-23	2355 - 2414	98	59 / 60	plus	ABC16951 ABC44097
MLOC	MLOC_62319.2	4308	7e-23	1726 - 1785	98	59 / 60	minus	ABC16951 ABC44097
MLOC	MLOC_62319.6	4397	7e-23	1570 - 1629	98	59 / 60	minus	ABC16951 ABC44097
MLOC	MLOC_62319.7	3793	7e-23	1478 - 1537	98	59 / 60	minus	ABC16951 ABC44097
MLOC	MLOC_62319.4	4261	7e-23	1719 - 1778	98	59 / 60	minus	ABC16951 ABC44097
MLOC	MLOC_62319.1	2611	7e-23	1726 - 1785	98	59 / 60	minus	ABC16951 ABC44097
MLOC	MLOC_62319.3	2837	7e-23	1721 - 1780	98	59 / 60	minus	ABC16951 ABC44097
JLOC1	JLOC1_40777.2	4296	4e-23	2473 - 2532	98	59 / 60	plus
JLOC1	JLOC1_40777.1	4172	4e-23	2349 - 2408	98	59 / 60	plus
Harvest21	ABC22338	1181	3e-25	1122 - 1181	100	60 / 60	plus
Harvest35	U35_26453	1181	3e-25	1122 - 1181	100	60 / 60	plus

Contig Sequence (1181 bp)

>U35_26453 1181 Hv_44K_v2
GGATGGCGGAGAGAAGACAGGCTAAGAAAGGACGGAACTAAGAGTGATACATACTACACT
GACCCAGTGAGTGGTTACGAATTTCGCTCTCTGAAGGACGTGCAACGTTATATTGAATCA
GGAGACATAAGTAAATGCAATATTAGGCCAAAGAAGAGAACTGCCCAGAATGCTTGTATT
ACACAGAATCAAGATTATACAGGAACCTCATCAGAATACGCAAGACCAGGTACTGCTGAT
AAGGCTATTCAATGTGAATTACTAACTGAAGAAGGGATCAGGCTACCGTGGGAGGAAATG
CTCAAGACAATTACTCAAAATAAAATGTTACCAGAGCCTGAAGTCATGAAACTGATGCAA
AAATATGCGGACAAAGTTGATCCCTCGGAACACAAGAGCGTGCAACCAGTCTCTCGACAG
CGTGCTTCAAGGGCAAAGAGATCTGTTCAAAGAAAAGAACCAAATGCAGAGGTGAAAACC
AGGAAGCGTAAAACCATGTCTAAAGAAAAGGTTGCCACACCTCCCACTCCCAGAGTGTCA
CCCCGCTTAGTTGCATGGAAGGTTAATCCTGAAGTTAACACCGAGCCTCAAGATGAGCCG
ACCATTGTAAATCTTGCCAATCAGGTAAAGCCTGTTCAAGAAAAAACTGCGGATGTACGG
AAAGTTAATCCTGAAGGAAACACCGAGCCTGAAGATGGACCTACCAGGGGAAATCTTGTC
AATCAGGTACAGCTTATTCAACAAAAAACTGCGGATGTGAGCCAGGCAGACAATGTCATT
CAAATACAAACCAAGCATGAGAACACTGCCAATCAGTTACACTCGAGGCAAGCAGATGCT
GCTGTTCCAGTGCATGTCAGTTACGAGGGCACTGTCAATCGGCTACAGCTGTGCCAAGCA
GACCCTGTCACCCAAATCCAAGCTGATAATGTGGTTCCATTGCAGACCCTTCATGTGGGC
GCTGTCAGTCAGTTATGGTCGAGCCAGGCAGCCACTGCCAATCGAATACAGACCAATCAG
GAGAGTACTGCCAGTCGGTTACAGTCGAACCAAGCAGAGAATGCCAATCACATACATGGT
ATGCAGAATTACACTGCCAACTACTCACAGCTGAGGAAAGCAGACACTATGCATCAGAAA
CAGACTAATCAGAAAAATACTGCCAGTCAGTCACGTTCGAG

Homology of Contig U35_26453 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value
Rice v7	None
Brachypodium v1_2	Bradi3g17857.1	1029	4e-108
Arabidopsis v10	None