barSeed - Barley Seed Development Database

Probe CUST_5050_PI390587928

Source Contig U35_510

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_5050_PI390587928	Hv_44K_v2	ATTGTGTGGGAACAAAGGGGGTTGGTTCCTTGTATTAACTAGGAGAAAATAAACCAGAGC	554	GeneList: blue MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	1.657	1.640	1.538	0.899	0.252	0.212
Raw	1001.674	1636.569	1321.325	1206.849	120.121	111.033

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
Harvest21	ABC04779	617	3e-25	4 - 63	100	60 / 60	minus	ABC04779
Harvest21	ABC04777	2158	8e-21	1963 - 2024	95	59 / 62	plus	ABC04777
Harvest35	U35_510	617	3e-25	555 - 614	100	60 / 60	plus
Harvest35	U35_175	2158	8e-21	1963 - 2024	95	59 / 62	plus

Contig Sequence (617 bp)

>U35_510 617 Hv_44K_v2
GCATCTGCTGCCCAATCTGCTGCTACTGTTGTCCAAGTTGGCACAAAAGAGATTCAATCA
AAGATGAGAGAAGGGGGTTATGATCAGAAGGTGAACGAAACTGTGAATGTTGTTACCAAT
AAAACTGCAGAGATTGGAAGCAGAACCTGGGGGATTATGAAAGGAGTGATGGCATTGGCC
ACACAAAAGGTAGAGGAGTATGCCAAGGAAGGTGGCGGTGGCTGGGGTGATGATTGGCAA
CAAAGGGAGCAGCAGAACAACAACAACGAGCCTTACCGCAGGTATGAGCAGGAGACCAGC
AATGGCAACAGCAACGGCTGGAATTCTCCGCAAGACGGATCAGCGAAGAACCACAATTCC
AATTCTTGGGATGATTGGGATGACCAAGACAAGAAGGAAGATCTAAAAGAGCAGAAGGCT
TATGAGTTGCACCACATGACGGCAAGATTTCGCCGATCATTGCGTGGCGGTGCTCCCTTG
GGATAGAAGATTGTAATTATGGTGACGCTCTCTTAACGATTTCTCCTTTTTTGTTTCTGC
TGGATGGCTGGACGATTGTGTGGGAACAAAGGGGGTTGGTTCCTTGTATTAACTAGGAGA
AAATAAACCAGAGCCAT

Homology of Contig U35_510 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None