barSeed - Barley Seed Development Database

Probe CUST_5039_PI390587928

Source Contig U35_517

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_5039_PI390587928	Hv_44K_v2	AGGGGAAGGAAGGAAGGAAGATGAGCCGGTGGTTTGAGTTTGACCATATCCATTCTTTAT	209	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK375145	2555	2e-24	2242 - 2301	100	60 / 60	plus	ABC02143 ABC02148 ABC45008 ABC49823
MLOC	MLOC_5287.2	1766	2e-24	1639 - 1698	100	60 / 60	plus	ABC02148 ABC49823
MLOC	MLOC_5287.1	2319	7e-23	272 - 328	100	57 / 57	minus	ABC02143 ABC02148 ABC49823
JLOC1	JLOC1_3395.1	2525	4e-23	1977 - 2033	100	57 / 57	plus
Harvest21	ABC02149	689	3e-25	250 - 309	100	60 / 60	minus
Harvest21	ABC02144	1964	1e-23	1643 - 1699	100	57 / 57	plus
Harvest21	ABC39092	514	6e-22	269 - 325	98	56 / 57	minus
Harvest35	U35_517	532	3e-25	210 - 269	100	60 / 60	plus
Harvest35	U35_397	1981	1e-23	1658 - 1714	100	57 / 57	plus

Contig Sequence (532 bp)

>U35_517 532 Hv_44K_v2
GACAACATGCAGAAGCCGGCCTTCGTCTTCGACGGCCGCAACGTCGTCGACGCCGAGAAG
CTCAGGGAGATCGGCTTCATCGTCTACTCCATCGGCAAGCCGCTCGACGGGTGGCTCAAG
GACATGCCCGCCGTCGCCTAATTCGCTCTCCACGTCGGCCGGCCTCGTCTGTCTGCCGGC
GGCGTCGTCGATCGGGGCTGCAGGAAGGCAGGGGAAGGAAGGAAGGAAGATGAGCCGGTG
GTTTGAGTTTGACCATATCCATTCTTTATAGTTTGCGTTTTGCAGGAGAAGCATCAACAA
CAGTTCCTCGCCCGGGCATAAAAATTTAGTAAACCTTCGTGTCTTGTTAAGTTTTCGATC
GATACATGTTTGCGTCTGTAGATCTTATAATCAAACTCCTCGGCCCCCTGTGCTGTCCGA
GGAGGTTTTTTCCCCTTTGTATCCGATGAACTTTGTAGCCGGTTGGTTCCTCAACTGTTT
TGCTGAAATTGTTACAGAATCAAATGTGTTTTTAAAAAAAAAAAAAAAAAAA

Homology of Contig U35_517 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None