barSeed - Barley Seed Development Database

Probe CUST_5026_PI390587928

Source Contig U35_526

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_5026_PI390587928	Hv_44K_v2	ACTCGAACTGATGAATATGATCCGTTCATCTTACCGTGCTATTTTGCTGACGGCGAACGA	288	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_11890.2	4011	2e-24	2606 - 2665	100	60 / 60	plus	ABC37056
Harvest21	ABC36816	542	3e-25	289 - 348	100	60 / 60	plus
Harvest35	U35_526	1042	3e-25	289 - 348	100	60 / 60	plus

Contig Sequence (1042 bp)

>U35_526 1042 Hv_44K_v2
GTGACAAGTCGTTTGGGCGTGACATAGTTGACTCCCACTACAAGGCTTGCCTCTTTGCCG
GCGTCAACATCAGTGGCATCAACGGCGAGGTCATGCCCGGACAGTGGGAGTTCCAAGTTG
GCCCGACTGTTGGCATTTCTGCTGGTGACCAAGTGTGGGTCGCTCGCTACATTCTTGAGA
GGATCACCGAGATCGCCGGAGTTGTCGTCACGTTTGACCCCAAGCCCATCCCAGGCGACT
GGAACGGTGCTGGTGCTCACACGAACTACAGGTAATTGAGATTGAGATACTCGAACTGAT
GAATATGATCCGTTCATCTTACCGTGCTATTTTGCTGACGGCGAACGACTCTGCTGCATC
CAGTACCGAGTCGATGAGGAATGACGGTGGGTTCAAGGTCATCGTGGACGCGGTCGAGAA
GCTCAAGCTGAAGCACAAGGAGCACATCGCGGCCTACGGCGAGGGCAACGAGCGCCGTCT
GACCGGCAAGCACGAGACAGCCGACATCAACACCTTCAGCTGGGGTGTGGCAAACCGTGG
CGCGTCGGTGCGCGTGGGCCGGGAGACGGAGCAGAACGGCAAGGGCTACTTCGAGGACCG
CCGGCCGGCGTCCAACATGGACCCCTACGTGGTCACCTCCATGATCGCCGAGACCACCAT
CCTGTGGAAGCCCTGAAGCTCCGGTCGCCGTGTGATGGACCGTCGGTGATGGGGTCCGGT
GGTGGCCATTGGAGGATTCGTGCCTTGGGCGAAAATTCTTCCAGCATTTTCCTTTTACGT
TTGGTTGCATACTACTCCTAGTCCGCTTAGGTAGGTCACATCATCATGGTCATCTCTTCT
CGTTCTCGTCTTTGGGTGGGTGGTGGGTGATGGGTGGCAAGGGGCGTGTCAAAGCACAAG
ATTACTACAGTATTTGGTTGATTGTTTTCCCTTGCCGTCTGGATGCTATGGTCTCGTGTA
ATCATCGATTGATATGGTAATAAAATGGTCCGTACCGCAGCCGTGGTACCACGCCGCTTG
TCTCAAAAAAAAAAAAAAAAAA

Homology of Contig U35_526 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os02g50240.1	357	9e-101	protein\|glutamine synthetase, catalytic domain containing protein, expressed
Brachypodium v1_2	Bradi3g59970.1	357	2e-101
Arabidopsis v10	AT5G16570.1	356	1e-94	\| Symbols: GLN1;4 \| glutamine synthetase 1;4 \| chr5:5421898-5424523 REVERSE LENGTH=356