barSeed - Barley Seed Development Database

Probe CUST_5025_PI390587928

Source Contig U35_527

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_5025_PI390587928	Hv_44K_v2	AATGGTCATCATCTTGTCAACATCCTTGATGCCAATCAAGATCCCCCCTTACTAAATTCG	429	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_11890.2	4011	2e-24	1571 - 1630	100	60 / 60	plus	ABC37056
Harvest21	ABC01649	585	3e-25	430 - 489	100	60 / 60	plus
Harvest35	U35_527	587	3e-25	430 - 489	100	60 / 60	plus

Contig Sequence (587 bp)

>U35_527 587 Hv_44K_v2
AGCCCACAGGCCATCTTCAAGGACCCGTTCAGGAAGGGAAACAACATCCTTGTAAGTGAC
CACTCCACTATCATCATCGTGTGTACAATAGACTGTAGCACTGCTGGCCGCGCAAGTGAT
CTGCACCTGTAGTACTAGTAGGAGTGTTTTTCACTGTAGTCGATTGATCTATAGCTCTTT
TGGTCAACTACGAAGATTAACGAGCACCATTAAGAGGGGAGATCAACTTAACTATCTTCT
CATGTACTACTTGGTGCAGATTTTTTTGGTGCAGTATTCATACTAGCTGTTGATACTCCT
ATTTCTGACGCAAATTGTATCCCAGTCAAGGACCATCCAGGGTTGTGAATGAATTGTTAT
ACGTATTTTTGGTTATTAATTAGGTGTGATTGTCTGGTCCACCTAATAACTACAGTAGAG
AGGGAATCCAATGGTCATCATCTTGTCAACATCCTTGATGCCAATCAAGATCCCCCCTTA
CTAAATTCGAACCACTTGCAGGTCATGTGCGATTGCTACACCCCAGCTGGAGAGCCAATC
CCCACCAACAAGAGATACAACGCTGCTAAGATCTTTAGCAACCCCGA

Homology of Contig U35_527 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None