barSeed - Barley Seed Development Database

Probe CUST_501_PI415269222

Source Contig CV061470

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_501_PI415269222	Hv_44K_v2	GCGTGCAGTCTGTTACAGCAAAAATCAAATCACCATTTACTTGTACTGTTTTATTAGTTG	502	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK365256	1560	2e-24	1460 - 1519	100	60 / 60	plus	ABC18015
MLOC	MLOC_44386.1	1423	9e-22	90 - 147	98	57 / 58	minus	ABC18015
JLOC1	JLOC1_28768.1	1427	5e-22	90 - 147	98	57 / 58	minus
Harvest21	ABC18015	678	2e-22	578 - 635	98	57 / 58	plus	ABC18015
Harvest35	U35_22460	678	2e-22	578 - 635	98	57 / 58	plus

Contig Sequence (589 bp)

>CV061470 589 Hv_44K_v2
AGTCGGACGACCAGTCGGCGCTGGCATACCTTCTGCTCAAGAACCGCAAGAAGTGGGGCG
CCAGGACGTACCTGGAGCACGACTACTACTTCCAGGGATACTGGGCGGAGATCGTGGACA
AGCTCGACGGCGTCGCGGCGAGGTACAGGGCGGCAGAGCGGCGGTTCGGGCCGGCGCTCC
GGCGAAGGCACGCGGAGGGGGAGCACGCGCTGTACGCGGCGGCGAGGAGCGCGGCACTGA
GGAAGAAGGACGGCGGCGTCCCGGGGCCCGACGGGGGCGGGCAGAGGGCGTCCTGGCGCC
GGCCGTTCGTGACGCACTTCACCGGATGCAACCCCTGCGGCGGCAAGCCAAACGAGATCT
ACTCCAACGAGACCTGCGCCGACGGCATGCGCCGCGCGCTCAACCTCGCCGACGACCAGG
TGCTCCGCGCCTACGGCTTCCGCCACGCCGGACCGCTCAAGGACGACGTGCGCCCGCTCT
AGTTTAGTCGTAGTCGAATTGAGCGTGCAGTCTGTTACAGCAAAAATCAAATCACCATTT
ACTTGTACTGTTTTATTAGTTGAAATGAAATGAAAAGATGATGACAGCG

Homology of Contig CV061470 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os11g34390.1	484	4e-59	protein\|glycosyltransferase, putative, expressed
Brachypodium v1_2	Bradi4g16670.1	480	1e-63
Arabidopsis v10	None