barSeed - Barley Seed Development Database

Probe CUST_5006_PI390587928

Source Contig U35_546

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_5006_PI390587928	Hv_44K_v2	GTAAGAAGAAGTTGGTCGTTGCCTTATGAAAAACAAGAGCTAGCAGCTAATTCGCCATGC	1005	GeneList: greenyellow MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	8.822	6.973	1.368	0.647	0.159	0.290
Raw	2315.017	3038.472	491.482	394.966	31.564	64.223

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK359183	1715	2e-24	1656 - 1715	100	60 / 60	plus	ABC01916 ABC09123 ABC41275
MLOC	AK365791	4336	2e-24	1008 - 1067	100	60 / 60	plus	ABC01916 ABC38745
JLOC1	JLOC1_29194.1	1120	8e-25	881 - 940	100	60 / 60	plus
Harvest21	ABC29442	145	3e-25	24 - 83	100	60 / 60	plus	ABC29442
Harvest21	ABC01918	1100	3e-25	1006 - 1065	100	60 / 60	plus
Harvest21	ABC01916	767	3e-25	18 - 77	100	60 / 60	minus	ABC01916
Harvest35	U35_546	1161	3e-25	1006 - 1065	100	60 / 60	plus

Contig Sequence (1161 bp)

>U35_546 1161 Hv_44K_v2
GAGAGAACCCTCACAGCCACAGCCACAGCCACAGCCACAGACGAAGCGCGAAGCGATATC
GTCGCGAGTGGGAGTCTAGCAGGCGGCCATGGCACAGTCGATGCTCATGTCCGGCGTCAA
CGGCGTGGCCTCCGGCAGGAGCCTGCTGCAGGCGGCCAGGCCGTCGTCGGCGTCCACGCC
CTTCTCGCGGCTCGCGCTCTCCTCCTCCTCGGCGGCCTACTACAAGCACATGCCGTCCCT
CTCCGTCCGGACCATGGCCCTGTTCGGCAAGTCCAAGACCAAGGCCGCGCCGGCCAAGAA
GGTCGTTGCGCCCAAGCCCAAGACGGAGGACGGCATCTTCGGCACGTCCGGCGGGATCGG
TTTCACCAAGGAGAACGAGCTCTTCGTCGGCCGTGTTGCCATGATTGGCTTCGCCGCGTC
GATCTTGGGAGAGGCCATCACCGGCAAGGGCATCCTGTCCCAGCTGAACCTTGAGACCGG
CATCCCGATCTACGAGGCGGAGCCCCTCCTCCTCTTCTTCATCCTCTTTACCCTCCTCGG
CGCCATCGGCGCGCTCGGAGACCGCGGCAGGTTCGTCGACGAGCAGCCCACCGGCCTCGA
CAAGGCCGTCATCGCCCCCGGCAAAGGCTTCCGCTCAGCCCTCGGCCTCAGCGAGGGAGG
TCCGCTGTTCGGGTTCACCAAGTCGAACGAGCTGTTCGTGGGGCGGCTGGCGCAGCTGGG
GATCGCCTTCTCCATCATCGGGGAGATCATCACGGGCAAGGGCGCGCTGGCGCAGCTCAA
CATCGAGACCGGGGTGCCCATCAGCGAGATCGAGCCGCTCGTGCTCTTCAACGTCGTCTT
CTTCTTCATCGCCGCCATCAACCCCGGCACCGGCAAGTTCATCAGCGGCGAGGACGACGA
CTAGATCGGCACCGGCACGCGCGAATGCTTTTTGGCCATTAATTGTACGTACGTACGTGC
TTTGCCTGTTTGTTGTGTTCGTGAGACCTTGGGGTGTACTTAGGTGTAAGAAGAAGTTGG
TCGTTGCCTTATGAAAAACAAGAGCTAGCAGCTAATTCGCCATGCAAAAAAAAAAAAAAA
ATTCTATAAAATAAAAATAATGATCCTTCCCTTTTCCCTTAATGAAGCGTAGAATGAGAG
TGGGAAAAAAAAAAAAAAAAA

Homology of Contig U35_546 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os01g64960.1	269	6e-108	protein\|chlorophyll A-B binding protein, putative, expressed
Brachypodium v1_2	Bradi2g56260.1	270	5e-132
Arabidopsis v10	AT1G44575.1	265	4e-90	\| Symbols: NPQ4, PSBS \| Chlorophyll A-B binding family protein \| chr1:16871768-16873194 FORWARD LENGTH=265