barSeed - Barley Seed Development Database

Probe CUST_5001_PI390587928

Source Contig U35_551

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_5001_PI390587928	Hv_44K_v2	CATGGAGTAATTGTTATCTGCATGCTCGATACATCAGTAATAATCCACTGTGTTTTGTTT	934	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_5503.4	2279	7e-23	2055 - 2114	98	59 / 60	plus	ABC02427 ABC02433 ABC02436 ABC43768
MLOC	MLOC_5503.2	2703	7e-23	2476 - 2535	98	59 / 60	plus	ABC02427 ABC02433 ABC02436 ABC43768
JLOC1	JLOC1_3540.1	1365	4e-23	1121 - 1180	98	59 / 60	plus
Harvest21	ABC02437	680	1e-23	593 - 652	98	59 / 60	plus
Harvest21	ABC02433	999	1e-23	934 - 993	98	59 / 60	plus	ABC02433
Harvest35	U35_551	1034	3e-25	935 - 994	100	60 / 60	plus

Contig Sequence (1034 bp)

>U35_551 1034 Hv_44K_v2
CAGAGCACCACAGGGTAGCTACCAGTAGCACATACACTAACAATGGCGATGGCAAGGGTG
CCCATCCTCGTCGCCGTGGCCCTCATGGCCGCGTCGGCCTCCTGCAGCGCATGGGATCCC
ACCATCCGGATGGTCGACGACGCGGTGGCGCCGCTCATCCACGCGCTGCGGCCGCTGCTG
GGCTCCGGCGGGCAGCTGGGGAGCCGCGGCGGCGTGCCGTGCGACAGCTGGAGGCTGGGC
GTGGAGGCGTACAACGTGCGGGACTGGAAGACGGTGCCGGCCAACTGCGAGGGCTACGTG
GGGCACTACATGCTCGGCAACCACTTCCGGCGCGACTTCAAGGTCGTCATCGACCAGGCC
ATCGCCTACGTCGACGGCCTCAAGCTCGCCGGCAACGGCAAGGACGTGTGGGTCTTCGAC
ATCGACGAGACCACCCTCTCCAACCTCCCTTACTACGCCACGCACGGCTTTGGGGCTAGG
CCATACAACGCGACGAGCTTCGACGCGTACGTGCTGGAGGGGAGCGCGCCGGCGCTGCCG
GAGACGAAGCGGCTCTACTACAAGCTACTCAAGGTGGGCATCAAGCCGGTGTTCATCACA
GGCCGGACGGAGGACAAGAGGGCCGTCACCGTCGGGAACCTCCGCAGCCAGGGCTTCTCC
GGGTGGATGAACCTGACGCTCAAGCAGCACGGATTCAAGGGCTCCGCCATATCCTACAAG
TCCGCCGAGAGGAAGAAGCTGCAGGACGCCGGGTACGTCATCGTCGGCAACATCGGCGAC
CAGTGGAGCGACATCCTCGGCGCGCCCGAGGGCGCTCGCACCTTCAAGCTGCCTGACCCC
ATTTACTACATCGCCTAGGTCGGCTGCGGCCATTTGGTTGCCCCATGCTCGTGCTCCACG
AATAATAATCAAGCTCCATGCTCTCTTGATACTCCATGGAGTAATTGTTATCTGCATGCT
CGATACATCAGTAATAATCCACTGTGTTTTGTTTTTTTGAAAAAAAAAAAAAAAAAAAAA
AGTCCACTGTGTTG

Homology of Contig U35_551 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os05g10210.1	266	8e-87	protein\|HAD superfamily phosphatase, putative, expressed
Brachypodium v1_2	Bradi2g33317.1	286	7e-133
Arabidopsis v10	AT4G29260.1	255	1e-64	HAD superfamily, subfamily IIIB acid phosphatase \| chr4:14422310-14423409 REVERSE LENGTH=255