barSeed - Barley Seed Development Database

Probe CUST_49_PI390587928

Source Contig U35_7822

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_49_PI390587928	Hv_44K_v2	AGCTGCTTAGATTTCTTTGATTCATGGGGAGTTTGATGGATGTTGTGGTGTTTATCTGTG	1544	GeneList: mediumpurple3 MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	4.832	3.728	1.324	0.673	0.268	0.357
Raw	8026.930	9558.220	2964.467	2384.843	335.668	484.284

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK376289	2404	9e-22	2264 - 2325	97	60 / 62	plus	ABC16466
MLOC	MLOC_15703.1	1718	9e-22	1629 - 1690	97	60 / 62	plus	ABC16466
MLOC	MLOC_15703.2	1669	9e-22	1553 - 1614	97	60 / 62	plus	ABC16466
MLOC	MLOC_15703.4	1654	9e-22	1436 - 1497	97	60 / 62	plus	ABC16466
JLOC1	JLOC1_10789.1	2275	5e-22	1677 - 1738	97	60 / 62	plus
Harvest21	ABC16466	1604	3e-25	1545 - 1604	100	60 / 60	plus	ABC16466
Harvest35	U35_7822	1604	3e-25	1545 - 1604	100	60 / 60	plus

Contig Sequence (1604 bp)

>U35_7822 1604 Hv_44K_v2
GGCCGCCTCGGCCACCGCTCCCCGGCTGCCACCTCTGCGCAGGCGCCGCCCGCTAAGCCG
CCGCAGGAGGTCCCGATCCCCGAAAACGGGGCCGGCGGCGGCGGTGGAGGAGAGGAGGAG
CTCGACAAGAGCTTCGGCTACGACTGCCACTTCGCGGTCAAGTACGAGCTGGGAAAGGAG
GTGGGTCGCGGCCACTTCGGCCACACCTGTCTCGCGCGTGCCCGCAAGGGGGACATGAGA
GGTCAAGTCCTAGCTGTCAAGGTCATCTCCAAAGCCAAGATGACAACAGCAATATCTATC
GAGGATGTGCGTAGAGAGGTGAAAATTCTGAAGGCTTTATCTGGGCATTCAAATCTTGTG
AAATTTTATGATGCATGTGAGGATGCCCTTAACGTCTACATCATCATGGAGTTGTGTGAA
GGTGGGGAGTTGTTGGACAGAATTTTGTCCAGAGGTGGGAGGTACACTGAAGATGATGCT
AAAGTTATCATCAAACAGATATTAAGTGTAGTTGCTTTCTGCCATCTTCAGGGCGTCGTT
CATCGTGATCTTAAGCCAGAGAATTTCCTATTCAGTACTAGAGATGAACATTCTCCTATG
AAGCTCATCGATTTTGGCCTCTCTGATTTTATAAGGCCAGATGAAAGGCTGAATGACATT
GTTGGTAGTGCATACTATGTTGCTCCAGAAGTCCTACATAGGTCATATAGCACAGAAGCA
GACATGTGGAGCGTAGGTGTTATCACTTATATCTTGCTGTGTGGTAGCAGACCATTCTGG
GCACGCACTGAATCAGGAATTTTCCGCTCCGTGCTGAGAGCTGATCCTAATTTTGATGAT
TCACCATGGGCATCAATATCTCCTGAAGCTAAAGACTTTGTCAAAAGACTTCTTAACAAA
GATTACAGAAAAAGAATGACTGCTGCACAGGCACTCTCTCACCCCTGGTTGCGAGATGAG
TGCTGCCCAGTCCCTCTGGATATGTTAGTTTTTAAGCTGGTTAAGGCGTACCTTCGTTCC
ACGCCTTTCAAACGGGCAGCATTAAAGGCTCTGTCTAGAGCTATAACAGAAGATGAGCTT
ATCTATACCAGAACACAATACAACTTATTGCAACCAAGTAGTCAAGATGGTCGAATATGC
ATTGAGAACTTCAGGATGGCCCTTCTACAGAACTCCACTGATGCTATGAAAGAATCTAGA
GCTCTTGATATCTTAAGCACATTGGAGCCGCTTGCATATAGGAGAATGGACTTTGAGGAG
TTCCGTGCAGCGACAATCAGCCCTTACCAACTTGAGGCTTCGTCCATGTGGGACGAAATT
GCGAGCACCGCATTTGAGTGCTTCGAGCAGGAAGGCAACCGTGTTATCACAATTGAGGAG
CTAGCTCAGGAGATGAATCTTTCTTCTGCGGCGTATTCCATCGTCCGCGACTGGATTAGG
CCTTCAGATGGGAAGCTTAGCTTTATAGGCTACACCAAATTTTTGCATGGATTGACTATG
CGGAGCAGCAATGCGAGGCGCCATCACTGATCCGCTTTCGCCTCAGCTGCTTAGATTTCT
TTGATTCATGGGGAGTTTGATGGATGTTGTGGTGTTTATCTGTG

Homology of Contig U35_7822 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	Description
Rice v7	LOC_Os10g36710.1	633	protein\|CAMK_CAMK_like.40 - CAMK includes calcium/calmodulin depedent protein kinases, expressed
Brachypodium v1_2	Bradi3g30647.1	637
Arabidopsis v10	AT2G46700.1	595	\| Symbols: ATCRK3, CRK3 \| CDPK-related kinase 3 \| chr2:19182968-19186430 REVERSE LENGTH=595