barSeed - Barley Seed Development Database

Probe CUST_4993_PI390587928

Source Contig U35_559

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_4993_PI390587928	Hv_44K_v2	CGAAGAATGTCGTGATCTGAACATGTTTTGTGGAATCTATCTATCATTAATAGTTTCGCT	702	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_65215.2	801	2e-24	689 - 748	100	60 / 60	plus	ABC14638 ABC29565
MLOC	MLOC_65215.1	1154	2e-24	635 - 694	100	60 / 60	plus	ABC14638 ABC29565
JLOC1	JLOC1_42901.1	1060	8e-25	634 - 693	100	60 / 60	plus
Harvest21	ABC29565	437	3e-25	360 - 419	100	60 / 60	plus	ABC29565
Harvest21	ABC02033	752	3e-25	675 - 734	100	60 / 60	plus
Harvest21	ABC02032	840	3e-25	681 - 740	100	60 / 60	plus
Harvest35	U35_29960	437	3e-25	360 - 419	100	60 / 60	plus
Harvest35	U35_559	866	3e-25	703 - 762	100	60 / 60	plus
Harvest35	U35_558	742	3e-25	675 - 734	100	60 / 60	plus

Contig Sequence (866 bp)

>U35_559 866 Hv_44K_v2
TCGAGCACTGTTGGCCTACTGAGCTCCTGTCAGCGCCTCGCCTCCTCGCACCCGCATCCC
CGCGCTCCGCCGCCGCCGCCGCCGCCGCCTCCGAGCCGCTCGAAGCCCACCTCGTAGCCA
TGGCGGAGCAGACTGAGAAGTCTTTCCTCAAGCAGCCAAAGGTTTTCCTCAGCACCAAGA
AGGCTGACAAGGCAAAGAGGCCCGGCAAGGCTGGCAACCGCTTCTGGAAGAGTGTTGGCC
TTGGTTTCAAGACCCCAAGGGAAGCGATCGAAGGTACCTACATTGACAAGAAGTGCCCAT
TCACTGGAACTGTTGCCATCAGGGGCAGAATCATAGCTGGAACCTGCCACAGCGCCAAGA
TGAACAGGACGATCATCGTGCGCAGGAACTACCTTCACTTTGTGAAGAAGTATCAGAGGT
ATGAGAAGAGGCACTCCAACATCCCAGCTCACATCTCCCCCTGCTTCCGTGTCAAGGAAG
GCGACCATGTCATCATTGGCCAGTGCAGGCCCCTGTCGAAAACTGTGAGATTCAATGTCC
TGAAGGTCGTTCCAGCTGGAACCACCGGAGGCGGGAAGAAGGCTTTCATCGCTGCTTAAG
CCCAGACTCTGATTCATGAGTAGTTCATAGTCAGAAGCTTTTCGCTCTTAAAACGTACCG
GCCTGCTGTTTCAAGATTTGATTCCCGTGTTTTTTGTCAAACCGAAGAATGTCGTGATCT
GAACATGTTTTGTGGAATCTATCTATCATTAATAGTTTCGCTTAAAAAAAAAAAAAAAAA
AAAAAACTGTCTGTTGTTTTTTGGTGAAGCCCTGGGGACTTTGTTTGCCTAGATGTGGTA
TTATTTTTACTTTAAAAAAAAAAAAA

Homology of Contig U35_559 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os04g52361.1	162	6e-97	protein\|ribosomal protein S17, putative, expressed
Brachypodium v1_2	Bradi5g21630.1	159	2e-100
Arabidopsis v10	AT3G48930.1	160	6e-94	\| Symbols: EMB1080 \| Nucleic acid-binding, OB-fold-like protein \| chr3:18141017-18142189 REVERSE LENGTH=160