barSeed - Barley Seed Development Database

Probe CUST_4986_PI390587928

Source Contig U35_16406

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_4986_PI390587928	Hv_44K_v2	ATAGTTCATAGTTCAGTGCTTTAGGCGCACTTGCATAGGACAAGCAGGTTGGAACGCAAA	1350	GeneList: brown MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	2.014	2.139	1.184	0.727	0.277	0.260
Raw	632.816	1055.560	501.707	490.569	63.863	66.551

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_56756.1	4839	7e-23	4723 - 4779	100	57 / 57	plus	ABC05672 ABC40894
MLOC	MLOC_56756.2	1690	7e-23	1332 - 1388	100	57 / 57	plus	ABC05672 ABC40894
JLOC1	JLOC1_36731.5	935	4e-23	801 - 857	100	57 / 57	plus
JLOC1	JLOC1_36731.4	916	4e-23	782 - 838	100	57 / 57	plus
JLOC1	JLOC1_36731.3	1276	4e-23	1142 - 1198	100	57 / 57	plus
JLOC1	JLOC1_36731.2	1340	4e-23	1206 - 1262	100	57 / 57	plus
JLOC1	JLOC1_36731.1	1386	4e-23	1252 - 1308	100	57 / 57	plus
Harvest21	ABC05672	1410	3e-25	1337 - 1396	100	60 / 60	plus	ABC05672
Harvest35	U35_16406	1424	3e-25	1351 - 1410	100	60 / 60	plus

Contig Sequence (1424 bp)

>U35_16406 1424 Hv_44K_v2
GTCGCTCCCCATTCACGCACCCCCCAGGCCCGTACGCCTGAACCGTCGCCCCCTCCCGCT
CCCAAACCCTAACCCCTCCGCCACCCATCGCCGCCACCGCGGCTCCCCTCTCTTCCCCGC
CGTCTCCACCGCGTCCGCGCCCTCTCCACCGCGTCCACAGCCTCCCTCCATCAGATTTCG
AGGGGTCTCGGGAGGATGGCGTTCCTGCAGAAGGTCGGGAATGCCCTCAAGCGCTCCGCG
GGCTCCGGCTCGGCGATGCTCCAGGCGGTCCGCTCCATGTCCTCCTCCAAGGTCTTCGTC
GGAGGCATCTCGTACGGCACCGATGACCAGAGCCTCGGGGATGCGTTTTCCAACTACGGC
CAAGTCACGGAAGCCAAGGTGATCATGGACCGTGAATCCGGAAGGTCAAGGGGGTTTGGT
TTCGTGACCTTCACTTCGTCGGAGGAGGCTGGAGCTGCCATTACTGGAATGGATGGGAAG
GATCTGCAGGGTCGGATAGTGAGGGTGAGCTATGCTCATGACCGTGGTAGTCGTCCAAGT
TTTGGCGGCGGCGGTGGCTATGGCGGCGGCGGTGGCGGCGGCTATGGTGGCGGTGACGGT
GGTTACAGTGGAGGAGGTGGTGCCTATGGTGGTGGTGGAGGCTACAGCGGAGGTGGTGGA
TATGGAGGTGGAGGCAGAGGTGGCGGTGGTGGATACAACAGTGGTGGCAATTATGGTGCC
CCTCAAGGCGGGCAAGGTGGCTATGGGGGCGATGCTGGTTTCACAGGGGTTGGTGGTGGT
GGTGGATACAATGCTGCTCCTGCCAACAACTATGGTGGCGATAGCCTGAATCAAGGGGGT
GGAGCACCTCCTGCATTTGGAGGTGGAAACTTTGGCGCAGGCAATGACAGCTACGCGGAC
GATGCCCCTGTTGATCTGCCCCCTGAAAAGCTCAATGACCTGCTGAAGGGTCTTAAATTT
GATGTTGCTGGCAAGGAGGATGGTGCTGGGGAGGGGGAGGGCGCTGGCGTGGTTGACGTG
GACACCAAGGAGGATGACTTTCTTGATGACGACTTGAGCAAGGATGAAGATGACTACGTC
AACAAGAGAAGCTGAATCCAGCAAGAAGCATCGGCTGAATAATTTTCCATGGAGTTGTTC
TCCATGACCGCCTTGTTTTTGGTATGCCCCGTGATGAAGATAATAATGTAGTGCTTGCAA
ACAAGTTATGTTTGGTCTCTTAGCTACGTTATGTACGTGTGCTTCGTGTACTGTGTGCTG
GACTCATAGTATGATGCAAACTTGAATCTGAACTTTGCATGTATTGGACTGAAACTGCAT
TTTCAGTAGCTGCTTCAGTTGCTATAGTTCATAGTTCATAGTTCAGTGCTTTAGGCGCAC
TTGCATAGGACAAGCAGGTTGGAACGCAAAAAAAAAAAAAAAAA

Homology of Contig U35_16406 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os10g17454.3	301	9e-53	protein\|RNA recognition motif containing protein, expressed
Brachypodium v1_2	Bradi3g24720.2	248	2e-56
Arabidopsis v10	None