barSeed - Barley Seed Development Database

Probe CUST_4985_PI390587928

Source Contig U35_560

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_4985_PI390587928	Hv_44K_v2	GGATCTTAGTTCTTGTCGAAGAAACATCTGAATTCTAAGCTGCCAAGTTTCAGTTTCTAC	676	GeneList: turquoise MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	1.435	1.348	1.145	0.872	0.344	0.391
Raw	9576.877	14093.293	10497.333	12686.540	1722.757	2156.440

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_7813.1	476	2e-24	187 - 246	100	60 / 60	minus	ABC02092 ABC02098 ABC34593
MLOC	MLOC_75214.3	1823	3e-21	996 - 1055	97	58 / 60	plus	ABC02092 ABC02098 ABC34593
JLOC1	JLOC1_5161.1	458	8e-25	127 - 186	100	60 / 60	minus
JLOC1	JLOC1_50167.1	1399	2e-21	692 - 751	97	58 / 60	plus
Harvest21	ABC02098	725	3e-25	649 - 708	100	60 / 60	plus	ABC02098
Harvest35	U35_560	756	3e-25	677 - 736	100	60 / 60	plus

Contig Sequence (756 bp)

>U35_560 756 Hv_44K_v2
CACATCTTCCTCCGTAAACCCTTCGTCCACTCCCCAGTCCCACCTCTAACTCAAACCAAG
AGACCTTTCCGCCGCCGCCGCCGCTAGCTCTAGCGCCCTCGCCGTCGGCCGCAGCCAAGC
TCCCGACTCGAGCTTCGCGGCCTCCCTCGCCGGTCCAACATGGGTAAGACACGTGGTATG
GGAGCTGGGCGCAAGCTCAAGACCCACAGGAGGAACCAGCGGTGGGCCGACAAAGCCTAC
AAGAAGAGCCATCTGGGGAACGAGTGGAAGAAGCCCTTTGCTGGTTCATCCCACGCAAAG
GGGATTGTCCTTGAAAAGATTGGCATTGAGGCCAAGCAGCCCAACTCTGCCATCCGTAAG
TGCGCTCGTGTCCAGCTGGTGAAGAATGGAAAGAAGATTGCCGCCTTTGTGCCAAACGAC
GGTTGCCTGAACTTTATCGAGGAAAATGACGAGGTGCTCATCGCCGGGTTCGGTCGGAAG
GGGCATGCCGTGGGAGACATCCCCGGTGTCCGGTTCAAGGTGGTGAAGGTGTCGGGCGTG
TCCCTCCTCGCCCTCTTCAAGGAAAAGAAGGAGAAGCCCAGATCTTAAAATGGCCCCTCT
CCATTCTTCCAAGATCGTCACGACAGCCATGAAAACTTTGCATCCCGCTGGTTACTCGCA
ATGTTTTTTAGCCTGTGGATCTTAGTTCTTGTCGAAGAAACATCTGAATTCTAAGCTGCC
AAGTTTCAGTTTCTACAAAAAAAAAAAAAAAAAAAA

Homology of Contig U35_560 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os03g60400.1	143	1e-98	protein\|40S ribosomal protein S23, putative, expressed
Brachypodium v1_2	Bradi2g54210.1	143	4e-99
Arabidopsis v10	AT5G02960.1	142	7e-94	Ribosomal protein S12/S23 family protein \| chr5:693280-694396 REVERSE LENGTH=142