barSeed - Barley Seed Development Database

Probe CUST_4984_PI390587928

Source Contig U35_16407

barSeed

Links

Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_4984_PI390587928	Hv_44K_v2	GGTTGACTGATGCTATGGTTCTGGATTATGTAGTTATGCTTTTTATTTATTGGCTTCATC	864	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_10663.1	4575	2e-24	3603 - 3662	100	60 / 60	minus	ABC05163
JLOC1	JLOC1_6994.2	4521	8e-25	952 - 1011	100	60 / 60	plus
Harvest21	ABC05163	1071	3e-25	848 - 907	100	60 / 60	plus	ABC05163
Harvest35	U35_16407	1088	3e-25	865 - 924	100	60 / 60	plus

Contig Sequence (1088 bp)

>U35_16407 1088 Hv_44K_v2
GCCCTAACGCTCCATCGATCTATTATATATTCGCAGTCGCTCCTCATCGTTTCCAAATCC
AAGCCTAGGGTTCATCTTCCGCCGCCGCCGCCGCCGCCGCCGCCACACCACCTCCCTCCC
TTCTCCAACATGGCTCTTCAGATCAGCAAGAAACGGAAGTTCGTCGCCGACGGCGTGTTC
CTGGCCGAGCTGAACGAGATGCTGACGCGCGAGCTCGGGGAGGACGGCTTCGCCGGCGTG
GAGATCCGGGTCACCCCCATGCGCACTGAGATCATCATCCGCGCCACCCGCACCCAGAAC
GTCCTCGGCGAGAAGGGCAGGAGGATAAGGGAGCTGACGTCGGTGGTGCAGAAGCGTTTC
AACTTTCCCGACGGCGGCGTAGAGCTCTACGCCGAGAAGGTCCTGAACCGCGGATTGTGC
GCCGTCGCTCAGGCCGAGTCCCTCCGGTACAAGCTGCTCGGTGGCCTTGCCGTCCGAAGA
GCATGCTATGGTGTACTCCGATTTGTAATGGAGAGTGGTGCGAAGGGCTGTGAGGTTATT
GTGAGTGGGAAGCTTAGGGCACAGCGTGCGAAGTCCATGAAGTTCAAGGATGGCTATATG
ATCTCTTCTGGCCATCCTGTCAACCAGTATATTGATGGAGCTGTGAGGCATGTTCTTCTG
AGACAGGGTGTGCTGGGCATCAAGGTTAAGATCATGCTTGACTGGGATCCTAAGGGAAAA
CAAGGACCAGCTACGCCTTTACCTGACCTTGTAACCATCCACCCACCTAAGGATGATGAT
GAGTTCCTGAGGCCTCTTGCAGCAGAAATTGCAGTTGCTTAAAAGTGAAAAATTAACATC
TGCCTAGGGGTATTTAAGAGTTTAGGTTGACTGATGCTATGGTTCTGGATTATGTAGTTA
TGCTTTTTATTTATTGGCTTCATCTTTTGAAGTTCAAACGACAGTAACCAATATATATTT
CCAAATTTCATGTTGCTATGGTATTGTTAGAATGTGTTATCTGATATACAGTGATAATTA
AACCTAAGAGCTACAACTTGCTTTTTATATTTGTGTTACCTTCTGTTCTTTTATGTTATA
TGCAAGTG

Homology of Contig U35_16407 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os07g41750.1	234	1e-141	protein\|40S ribosomal protein S3-1, putative, expressed
Brachypodium v1_2	Bradi1g21730.1	230	9e-152
Arabidopsis v10	AT5G35530.1	248	5e-134	Ribosomal protein S3 family protein \| chr5:13710355-13712192 REVERSE LENGTH=248