barSeed - Barley Seed Development Database

Probe CUST_497_PI390587928

Source Contig U35_44068

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_497_PI390587928	Hv_44K_v2	TATATAGTTCGTCTTTACTGCGCGCGCGTGTGTGGTTGGGGTGTCGATTTTTCTTTTCTT	513	GeneList: None MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	0.231	0.720	0.852	1.329	1.378	1.748
Raw	16.935	89.376	89.012	194.013	79.033	108.089

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_73300.2	1333	2e-24	258 - 317	100	60 / 60	minus	ABC06968
JLOC1	JLOC1_48791.1	1905	8e-25	1315 - 1374	100	60 / 60	minus
Harvest21	ABC41511	597	3e-25	514 - 573	100	60 / 60	plus
Harvest35	U35_44068	597	3e-25	514 - 573	100	60 / 60	plus

Contig Sequence (597 bp)

>U35_44068 597 Hv_44K_v2
CAGCGACGCCCCCCTTTACCTTTTTCTGTAGCTCCTTTGATCTTTATGCCCTCCTCCCCG
TGACTTTATCAAGAAATCTCAGGACAAATCTTGAGGCGCTTTTAGAGCGAGAGGGAGACC
GATGGCGGCGGCGGCGGCGAGCGTCGGAGGCGGGGCGGCGCCGTTCGTGTGGAAGACGTA
CCGGATGGTGGAGGACCCGGGGACGGACGGCGTCATCGGGTGGGGGAAGGGGAACAACAG
CTTCGTCGTCGCCGACCCCTTCGTCTTCTCGCAGACCATGCTGCCCGCCCACTTCAAGCA
CAACAACTTCTCCAGCTTCGTCCGCCAGCTCAACACCTATGTCAGTCCGTTGATTCATAT
TACTAATCCTCCATTTGTCTTGTCCATTTCCTGTACTTATCTTGATTCAGAGAGGGAGAG
AGAGAGAGAGATTTCTGTACTCCGGTGGAGTACAAGTTCTTATGTGCGTGTGTGTACAAC
TGTGTATGCAGTATGCGTGACATTTTTTGGGAGTATATAGTTCGTCTTTACTGCGCGCGC
GTGTGTGGTTGGGGTGTCGATTTTTCTTTTCTTCTGGAAACTGGTTTGGTGCGGATT

Homology of Contig U35_44068 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None