barSeed - Barley Seed Development Database

Probe CUST_4975_PI390587928

Source Contig U35_19015

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_4975_PI390587928	Hv_44K_v2	GCTCCTTGTTTACCCTCCTAGTTTGGTTTTTGTCCAATCAACATTGAGTTTAGTTAAATA	1594	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_44161.1	6604	2e-24	2241 - 2300	100	60 / 60	minus	ABC10691 ABC13271
MLOC	MLOC_44161.3	5809	2e-24	1446 - 1505	100	60 / 60	minus	ABC10691 ABC13271
JLOC1	JLOC1_28595.2	3073	8e-25	2688 - 2747	100	60 / 60	plus
JLOC1	JLOC1_28595.1	2773	8e-25	2388 - 2447	100	60 / 60	plus
JLOC1	JLOC1_28594.1	5812	8e-25	1449 - 1508	100	60 / 60	minus
Harvest21	ABC10692	610	3e-25	29 - 88	100	60 / 60	minus
Harvest21	ABC10691	1666	3e-25	1595 - 1654	100	60 / 60	plus	ABC10691
Harvest35	U35_19016	767	3e-25	680 - 739	100	60 / 60	plus
Harvest35	U35_19015	1666	3e-25	1595 - 1654	100	60 / 60	plus

Contig Sequence (1666 bp)

>U35_19015 1666 Hv_44K_v2
GCATTCATCGACTCAAAGTCAGGTCTTCAGAGGCCAATCGCCTGGATTGATGACAATGGA
AGGCGTTACTTCCCAGAAGTTCTTATTGAAGATCAGATAGCATATAGGAGGAAAGATTTT
GGCAATGGAGATCATGTCTATGTTAGAGCTGAGCCTAATGGGACACCTGAAATAAATGAC
CAGTATGGAGCATCCGAGAGTTCCGCAGAAAGCTCAAACTTTGAGTCCAGTACTGAAGAG
GTTTCTAGTGCTAAGAGAGTTAGAGCTGAGAAGAATATCATCAGGAAAATAAATTGTGAC
AATGGGGAAACTGTGGGAGAGAATGAACCACACACTTCGCTCCCTGCAGTCTTCAGTTGT
CAACCACAGCAAGATAAGCTGGGTGGGCAATCACGTGCTCAAGGAACTACCTCTGTTGTG
CAGAAAATGTTGCTGCAGGGAATGGGTACTGCTATTGGTTCCAAGGATATTATTGGAATC
CACCGAACTCCATTCTTGAATAATTATAGAGAAGACCGCTATGATCTCTTTCAAAAGCAG
GCAGAGATTACTAAATCTCAGCATGGTAATGCAAATGTGCGTTATGCTTGGCTTCCTTGC
TCGAAAGCTGCTGTGGATGAAATGATGCTGAATGGCACCTTGCAAGTTAAAAAGCCCACC
AGGTGTCCACCCTATGGAACTGGTGTACTCCTTGCGCCAGCTAACTGCTCCATTAACTGT
GTGAATTACTCTGATGTTGATGAAAATGGCATCATCTATATGATGTTGTGCCGGGTTGTA
ATGGGGAACGTAGAAATAGTTCACCATGGATCTAAGCAGCACCAGCCTAGTAACGAGTAT
TTTGATAGCGGTGTAGATGACCTTAAAAACCCGCAGCATTACATTGTATGGGATATGAAT
CTGAATAGTCACATCTATTCTGAATTTGTAGTCACCATCAAATTGCCATCTAAAGCCAAA
GATTCCATCTTCACCCAAGAAGATTGTCATGATTCATCTGATGCTTCACTGGTCTTGAGT
CCAAGTTCAGCCGACAGTGTATCACAGGACATGAATCTTGAGGCATCTCCAGCATTGGGT
GGTCAGTATGAAGCCCCCATGTTAGGAGATTCAATGGCAAAAGCTCCAAGTACACCTTGG
ATGCCTTTTTCCATGCTATTTGCAGCTATTTCGACCAAACTTCCTCGCGAGAAAATGGAC
ATGATCAATAACTGTTACGAAGAATTCAAGGCGAAGAAAATAAGCAGAATCGACCTAGTG
AAGAGGTTGCGGCTCATAGTCGGTGACAGAATGCTGGTATCCACAATAATTCGGCTCCAA
GATAAGAATAAGCTTGTGTTTCTCTTTTAACAGTTGCCTCCGATGGCGAAGCGGGAAGCA
GCAAATGTGCCAGCAGCCAAGGCACGAGGTCAGTGACCATGGTGGATTGGAGGAAGGAAC
TGGTCGACTTGTTATCATGAGTTGGAAGGAATGTAGTCTCCTGAGTTTATTTGCGTGTGT
CTATGAATCTGCCGCTCTGTCTGTCTGTTTTAGTAGTTGCAAAGAGGGAACTGTCCGAGT
ATACTTGTGAACCCAAGATGGTTACAAGGGAGAAGCTCCTTGTTTACCCTCCTAGTTTGG
TTTTTGTCCAATCAACATTGAGTTTAGTTAAATAATTCTCATTTTA

Homology of Contig U35_19015 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os10g42710.1	592	0.0	protein\|RCD1, putative, expressed
Brachypodium v1_2	Bradi3g34250.2	598	0.0
Arabidopsis v10	AT1G32230.1	589	2e-61	\| Symbols: RCD1, CEO, CEO1, ATP8, AtRCD1 \| WWE protein-protein interaction domain protein family \| chr1:11613427-11615894 FORWARD LENGTH=589