barSeed - Barley Seed Development Database

Probe CUST_4973_PI390587928

Source Contig U35_19016

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_4973_PI390587928	Hv_44K_v2	TCATAGTCGGTGACAGAATGCTGGTATCCACAATAATTCGGCTCCAAGATAAGTTGCCTC	385	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_44162.1	2664	2e-24	214 - 273	100	60 / 60	minus	ABC10691
MLOC	MLOC_44162.2	2364	2e-24	214 - 273	100	60 / 60	minus	ABC10691
MLOC	MLOC_44161.1	6604	3e-21	2682 - 2738	98	56 / 57	minus	ABC10691 ABC13271
MLOC	MLOC_44161.3	5809	3e-21	1887 - 1943	98	56 / 57	minus	ABC10691 ABC13271
JLOC1	JLOC1_28595.2	3073	8e-25	2394 - 2453	100	60 / 60	plus
JLOC1	JLOC1_28595.1	2773	8e-25	2094 - 2153	100	60 / 60	plus
JLOC1	JLOC1_28594.1	5812	2e-21	1890 - 1946	98	56 / 57	minus
Harvest21	ABC10692	610	3e-25	323 - 382	100	60 / 60	minus
Harvest21	ABC10691	1666	2e-21	1274 - 1326	100	53 / 53	plus	ABC10691
Harvest35	U35_19016	767	3e-25	386 - 445	100	60 / 60	plus
Harvest35	U35_19015	1666	2e-21	1274 - 1326	100	53 / 53	plus

Contig Sequence (767 bp)

>U35_19016 767 Hv_44K_v2
TGGGATATGAATCTGAATAGTCACATCTATTCTGAATTTGTAGTCACCATCAAATTGCCA
TCTAAAGCCAAAGATTCCATCTTCACCCAAGAAGATTGTCATGATTCATCTGATGCTTCA
CTGGTCTGAGTCCNAAGTTCAGCCGACAGTGTATCACAGGACATGAATCTTGAGGCATCT
CCAGCATTGGGTGGTCAGTATGAAGCCCCCATGTTAGGAGATTCAATGGCAAAAGCTCCA
AGTACACCTTGGATGCCTTTTTCCATGCTATTTGCAGCTATTTCGACCAAACTTCCTCGC
GAGAAAATGGACATGATCAATAACTGTTACGAAGAATTCAAGGCGAAGAAAATAAGCAGA
ATCGACCTAGTGAAGAGGTTGCGGCTCATAGTCGGTGACAGAATGCTGGTATCCACAATA
ATTCGGCTCCAAGATAAGTTGCCTCCGATGGCGAAGCGGGAAGCAGCAAATGTGCCAGCA
GCCAAGGCACGAGGTCAGTGACCATGGTGGATTGGAGGAAGGAACTGGTCGACTTGTTAT
CATGAGTTGGAAGGAATGTAGTCTCCTGAGTTTATTTGCGTGTGTCTATGAATCTGCCGC
TCTGTCTGTCTGTTTTAGTAGTTGCAAAGAGGGAACTGTCCGAGTATACTTGTGAACCCA
AGATGGTTACAAGGGAGAAGCTCCTTGTTTACCCTCCTAGTTTGGTTTTTGTCCAATCAA
CATTGAGTTTAGTTAAATAATTCTCATTTTAAAAAAAAAAAAAAAAA

Homology of Contig U35_19016 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os10g42710.1	592	1e-67	protein\|RCD1, putative, expressed
Brachypodium v1_2	Bradi3g34250.2	598	5e-75
Arabidopsis v10	None