barSeed - Barley Seed Development Database

Probe CUST_4970_PI390587928

Source Contig U35_19019

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_4970_PI390587928	Hv_44K_v2	TATGATCCGTTGTTTGACAGAAATCAGCGAGACAAACTACCAACAGATTGGCACAAAAAA	990	GeneList: brown MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	1.713	1.930	1.115	0.813	0.309	0.368
Raw	941.388	1637.397	831.138	934.465	126.047	164.224

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
Harvest35	U35_19019	1061	3e-25	991 - 1050	100	60 / 60	plus

Contig Sequence (1061 bp)

>U35_19019 1061 Hv_44K_v2
GGCGTCAAGAAGCTCAACGGTTGGGACGTATTCTCAGGGCAAAGGGTAAGCATCAAGATA
GGATGGCAGGTGGAAAAGAAGAATACAATGCCTTTTTCTATTCTCTTGTATCAACCGACA
CACAGGAAATGTATTATTCGACAAAAAGGCAACAATTCCTTATCGACCAGGGATATAGTT
TCAAGGTCATCACTAGCTTGCCGCCACCTGAAGAAGGACCTAACCTGAGTTTTCACACAC
TCGATGAACAGCTTGACCTTTTAGGCAAAGTGTTGAGCGCAGGGGATGACATGATTGGTG
TTGAGCACTTGGAAGAGGATTCTGATGGCAAGGCTCTCCTGAAGGCTCGGCGCTCTGCTG
GATTAATGAGCGCATTTTCTGGAGCGGGTGGAATGGTCTACATGGAGTACAACAAGGGCA
AGGGAGCCAAGAAGAAGGACCCAGCTAAGAGGCATACACTGTTCAAGAAACGCTACACTT
AGGGGTTCTGTTGTATGGCATTTGCAAGGAGGCCAGGAACCTATAGCGCGGGATTGGCTT
TGCTTGGACATGGTATGGTTAAAGGGGCTCTACTTATTGGACATAATGCATGTCTCACTG
TTAGCGCATCAGCCAGATTTCGCGCTAATCGCTTGTCATTAGAGAATTCTACTGGGAAGT
TTCCTCCAGATTCTTGTGGTGTGCATCTTTTCATTATCTCCAGTTCCGTATCAGAAGGGT
CAATTTTGGAGCTTATGAGAGGGAGGGTCAATTTTGGAGCTTATGAGAGGGAGGGCCAAT
TTTGGAGCTTATGAGAGGGAGAACAAGGGCATTTATCTTTCGCAGAAATGTAAATATTTG
TGCAAGTACCTGTATACAATATAACCAAAATCCACATTGCGAAGCTTTGCACAGCATGAA
CTCTTTGTTTCATTGTATACAGTTGTGACATACGGTTAGTTAAAACAATCTGGAAAAGTA
CTACCGCTTCCTCTCCTTTTAGGGAAATGTTATGATCCGTTGTTTGACAGAAATCAGCGA
GACAAACTACCAACAGATTGGCACAAAAAAAAAAAAAAAAA

Homology of Contig U35_19019 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os01g49680.1	767	5e-76	protein\|DNA repair helicase XPB2, putative, expressed
Brachypodium v1_2	Bradi2g47090.1	767	4e-87
Arabidopsis v10	AT5G41370.1	767	4e-69	\| Symbols: XPB1, ATXPB1 \| homolog of xeroderma pigmentosum complementation group B 1 \| chr5:16551337-16555792 FORWARD LENGTH=767