barSeed - Barley Seed Development Database

Probe CUST_4967_PI390587928

Source Contig U35_21332

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_4967_PI390587928	Hv_44K_v2	TAAAGTTGGTGATCGCATTGATGTCAAGCTTATTGAGATAAATGACAAGGGTCAACTTCG	1782	GeneList: blue MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	1.340	1.356	0.982	0.869	0.593	0.425
Raw	19.630	28.868	20.065	23.799	5.648	3.491

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK362539	3218	2e-24	2487 - 2546	100	60 / 60	plus	ABC16172
Harvest21	ABC14306	1842	3e-25	1783 - 1842	100	60 / 60	plus
Harvest35	U35_21332	1842	3e-25	1783 - 1842	100	60 / 60	plus

Contig Sequence (1842 bp)

>U35_21332 1842 Hv_44K_v2
GGCTGTTACAGCTGCTGGTATCGCCATGGCACTCTCTGAAGTTCCAAATAAACAAACAAT
TGCTGGCGTAAGAATCGGTATGATTAATGATCAGTTTGTTGTTAACCCAACAACTGAACA
AATGGAAGACTCGGAATTGGATTTGATGATGGCTGGGACCGATAGTGCTATATTGATGAT
AGAGGGATTCTGTAACTTCCTCACTGAGGAGAAGCTGCTTCAAGCTGTTGAAACGGGACA
GGCGGCGATTCGAGAAATCTGCAAGGCAATTGATGTTCTTGTCCAGACTTGTGGGAAGAA
GAAAATGGTCGAGGCTATCAATTTACCACCCACCGAACTCTACAGGCATGTTGAAGATCT
TTCTGGAGAGGAGTTGGTGAAGGCATTGCAAATAAAAGAAAAAATTCTCCGTAGAAAAGC
TCTTTCAGCATTGGAGGAGAAAGTAATAATGATTCTTTCAGAGCAGGGTTATGTGTCCAA
AGATGAGTTATCTGGAACCATTGAAAATTTAGCTGATATTGTCGAGGAGGAAGATGAGGA
CGAAGTTATAGAGGATGGTGAAGTGGATGAAGGTGATGTTCACATCAAGCCAGTGTCGAG
AAAGCCCCGCCGTCAGTTATTCTCAGAAGTTGATGTCAAGTTAGTCTTCAAGGAAGTTTC
ATCCAAATATCTGCGAAGGCGGATTGTAGAGGGTGAAAAGCGAAGCGATGGACGGAGTGC
CTGTGAGCTTCGCCCCATTAATTCTCAATGTGGAATTCTTCCACGGGCACATGGTAGTGC
ACTGTTCACAAGGGGAGAAACACAGGCACTGGCTGTGGTCACTTTAGGTGACTATCAGAT
GGCACAAAGAATTGACACCCTTGTTGACACCGAGGAATCAAAGAGTTTCTATCTTCAGTA
CACGTTCCCTCCATCATCTGTTGGTGAAGTTGGTCGAACTGGAGCACCTAATAGGAGAGA
GATCGGTCATGGTATGCTTGCAGAAAGGGCGCTGGAACCGATTTTACCTCCAGAGGTGGA
TTTTCCGTACACTATTCGCGTTGAGAGTACTATCACTGAAAGTAATGGCTCATCCAGCAT
GGCTTCTGTCTGTGGAGGTTGTTTAGCACTTCAAGATGCTGGTGTTCCAATAAAGTTCCC
TGTAGCTGGAATAGCAATGGGCTTAGTTCTTGACACGCATGAATTCGGTGGAGACGGCAC
ACCACTTATTCTTTCTGATATTACTGGATCTGAAGATGCCTCTGGTGACATGGATTTTAA
GGTTGCTGGTAATGAACATGGTATATCTGCTTTCCAGATGGACATCAAGGTAGTGGGGAT
AACTCTACCTGTAATGGAACAAGCACTTCTACAAGCTAGAGATGGTAGAAATCATATTCT
AAATGAAATGTTAAAATGTTCGCCTCCGCCAAGTAAAGCACTGTCTCCCCATGCTCCTGT
TATTCATGTTATGAAGGTTAAACCTAACAAGGTGAATTTGATAATTGGTTCTGGTGGAAG
GACAATAAAAAGCATACTCGAGGAGACTGGAGTATATGCCATTGATGCTCGAGATGATGG
CACGGTAAAAATTACTGCAAGGGACATGAAAAGCTTAGAGAAGTCAAAAAATATAATAAC
TAATCTTACCATGGTTCCAAAAGTTGGAGAAATTTTCAGGAACTGTGAGATCAAAACAGT
TGCTCCCTATGGAGCTTTTGTTGAAATTGCACCAGGGCGTGAGGGTTTATGTCATATCAG
CGAGTTGAGTTCAAGTTGGTTGGCCAAGGCAGAGGATGCTTATAAAGTTGGTGATCGCAT
TGATGTCAAGCTTATTGAGATAAATGACAAGGGTCAACTTCG

Homology of Contig U35_21332 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	Description
Rice v7	LOC_Os07g07310.1	903	protein\|polynucleotide phosphorylase, putative, expressed
Brachypodium v1_2	Bradi1g56280.1	901
Arabidopsis v10	AT3G03710.1	922	\| Symbols: RIF10, PNP \| polyribonucleotide nucleotidyltransferase, putative \| chr3:919542-924906 FORWARD LENGTH=922