barSeed - Barley Seed Development Database

Probe CUST_4964_PI390587928

Source Contig U35_21335

barSeed

Links

Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_4964_PI390587928	Hv_44K_v2	TACTACCAACAAAGTTTCAGCACGCAAGTGCTGATTTATCACATCTATCTGTTGTTGAAA	821	GeneList: yellow MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	2.504	2.458	1.390	0.534	0.277	0.320
Raw	83.291	123.650	62.263	40.683	5.439	8.016

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
JLOC1	JLOC1_42750.1	1038	3e-24	966 - 1024	100	59 / 59	plus
Harvest21	ABC14638	895	3e-25	822 - 881	100	60 / 60	plus	ABC14638
Harvest35	U35_21335	895	3e-25	822 - 881	100	60 / 60	plus

Contig Sequence (895 bp)

>U35_21335 895 Hv_44K_v2
ACGCCTTCTCTCGCCTCTCGCCGCCTAGTGCGTGCCGCCGTCGGCCCCATCGCCTTCGAG
CATCAGCCATGGCAGAGCAGACTGAGAAGGCTTTCCTGAAGCAGCCTAAGGTGTTCCTCT
GCTCAAAGAAGGCCACAAAGGGGAACAATAAGCCTGGCAAGGAGGGCAACAGGTTCTGGA
AGAGTGTTGGCCTTGGTTTCAAGACTCCCAAGGAAGCCATTGAGGGAACCTACATTGATA
AGAAGTGCCCATTCACTGGCACTGTGTCAATTAGGGGTCGCATCATTGCTGGAACATGTC
ATAGTGCTAAAATGAACAGGACCATCATTGTTCGTAGGAACTACCTTCACTATGTGAAAA
AATACCAGAGGTACGAGAAGAGGCACTCCAACATCCCTGCCCACATTTCCCCTTGCTTCC
GTGTGAGAGAAGGAGATCATGTGATCATTGGCCAGTGCAGGCCACTGTCCAAGACTGTGC
GGTTCAATGTGTTGAAGGTCGTCCCAGCAGGGTCAAAGAGTGGTGCTGTCAAGAAGGCGT
TCACCGGTGTCTGAGCAAGTCATGACCTTTTTTCTCTGAAACCTTTTCTCCATGAAATTT
TGACGTCACATCTATATTCTTCCATCTGTGTGTACGAGGGTTTTGCCTTGATTGTTCTCC
AAGCTTCCAAGTCAAGAGTGAGGGGTTTAGTGAAGTTATGTTCAGAGTGCTTCGTGAAGG
AGATTTTTGATGCTGTTACCTGGTTACTCGTTAATATACATCACTCTTTTTGGCCTTTTG
CTTGTGACGTAATCTGAATTTAGTCTGTAATGTTTATCTAGTACTACCAACAAAGTTTCA
GCACGCAAGTGCTGATTTATCACATCTATCTGTTGTTGAAAAAAAAAAAAAAAAA

Homology of Contig U35_21335 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os04g42380.1	161	3e-103	protein\|ribosomal protein S17, putative, expressed
Brachypodium v1_2	Bradi3g48600.2	162	1e-111
Arabidopsis v10	AT3G48930.1	160	3e-97	\| Symbols: EMB1080 \| Nucleic acid-binding, OB-fold-like protein \| chr3:18141017-18142189 REVERSE LENGTH=160