- Probe CUST_495_PI415269222
- Source Contig TA56887_4513
Probe Details
| Probe ID | Chip | Probe Sequence (60 bp) | Probe location | Differentially Expressed |
|---|---|---|---|---|
| CUST_495_PI415269222 | Hv_44K_v2 | TGTCTACAAGTTTGGTTACGGCCTCAGCTACTCCAGCTACTCTCGCCGGCTGCTCTCATC | 419 | GeneList: lightsteelblue1 MasterList: None |
Probe Values
| 3 dpa | 4 dpa | 5 dpa | 6 dpa | 7 dpa | 8 dpa | |
|---|---|---|---|---|---|---|
| Normalized | 7.116 | 3.300 | 1.308 | 0.848 | 0.541 | 0.776 |
| Raw | 590.628 | 407.971 | 146.926 | 154.133 | 33.904 | 54.611 |
Probe Sequence's BLAST hits in Barley Unigene Datasets
| Dataset | Hit | Hit Length | E-value | Position on Hit | % Identity | Match | Direction | Probes on Sequence |
|---|---|---|---|---|---|---|---|---|
| MLOC | AK368873 | 2492 | 2e-24 | 1918 - 1977 | 100 | 60 / 60 | plus | ABC13674 |
| MLOC | MLOC_6473.5 | 3538 | 2e-24 | 1718 - 1777 | 100 | 60 / 60 | minus | ABC13674 ABC15801 |
| MLOC | MLOC_6473.1 | 5323 | 2e-24 | 3616 - 3675 | 100 | 60 / 60 | minus | ABC13674 ABC15801 |
| MLOC | MLOC_6473.4 | 3898 | 2e-24 | 2895 - 2954 | 100 | 60 / 60 | minus | ABC13674 ABC15801 |
| MLOC | MLOC_6473.2 | 2541 | 2e-24 | 1561 - 1620 | 100 | 60 / 60 | minus | ABC13674 ABC15801 |
| MLOC | MLOC_6473.3 | 2642 | 2e-24 | 1662 - 1721 | 100 | 60 / 60 | minus | ABC13674 ABC15801 |
| JLOC1 | JLOC1_4227.1 | 3064 | 8e-25 | 1663 - 1722 | 100 | 60 / 60 | plus | |
| JLOC1 | JLOC1_4226.1 | 2533 | 8e-25 | 1532 - 1591 | 100 | 60 / 60 | minus | |
| Harvest21 | ABC17558 | 609 | 3e-25 | 422 - 481 | 100 | 60 / 60 | plus |
Contig Sequence (606 bp)
>TA56887_4513 606 Hv_44K_v2 CTCGCGGGCTCGTCCGACTACGTGCTCCTCTTCATGGGGCTCAGCCAGCAGCAGGAGAGC GAAGGGCGCGACAGGACCAGCCTGCTGCTCCCCGGGCAGCAGCAGAGCCTCATCACCGCC GTCGCCGACGCCGCCAAGAGGCCCGTCATCCTGGTGCTCCTCACGGGCGGGCCGGTGGAC GTGACCTTCGCCAAGAACAACCCCAAGATCGGCGCCATCCTCTGGGCCGGATACCCCGGC CAGGCCGGCGGGCTCGCCATCGCCAGGGTGCTCTTCGGCGACCACAACCCAGGCGGGAGG CTGCCCGTGACCTGGTACCCGGAAGAGTTCACCAAGGTGCCCATGACCGACATGCGGATG CGCGCCGACCCGGCCACCGGTTACCCCGGCCGGAGCTACCGCTTCTACCAGGGAGAGACT GTCTACAAGTTTGGTTACGGCCTCAGCTACTCCAGCTACTCTCGCCGGCTGCTCTCATCC GGCACGCCCAACACGGACTTGCTCGCAGGCCTGAGCACAATGCCAACACCGGCGGAAGAA GGCGGCGTCGCGAGCTACCATGTCGAACATATTGGCGCCCGAGGGTGCGAGCAGCTCAAG TTCCCG
Homology of Contig TA56887_4513 to Model Species (E-value threshold 1e-50)
| Pseudo-peptide dataset | Hit | Hit length | E-value | Description |
|---|---|---|---|---|
| Rice v7 | LOC_Os11g19210.1 | 783 | 3e-99 | protein|beta-D-xylosidase, putative, expressed |
| Brachypodium v1_2 | Bradi4g20240.1 | 768 | 5e-99 | |
| Arabidopsis v10 | AT1G78060.1 | 767 | 3e-62 | Glycosyl hydrolase family protein | chr1:29349796-29352868 REVERSE LENGTH=767 |