barSeed - Barley Seed Development Database

Probe CUST_495_PI390587928

Source Contig U35_32091

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_495_PI390587928	Hv_44K_v2	CTCATGATCCTCTGCATTGCTGTGACTGTTGGATTTAGAGACACTAAGCACATGGGAAAC	264	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK251407.1	2765	2e-24	1412 - 1471	100	60 / 60	plus	None
MLOC	MLOC_5685.2	1549	2e-24	108 - 167	100	60 / 60	plus	None
MLOC	MLOC_5685.1	2021	2e-24	580 - 639	100	60 / 60	plus	None
JLOC1	JLOC1_3673.1	1833	8e-25	195 - 254	100	60 / 60	plus
Harvest35	U35_32091	481	3e-25	265 - 324	100	60 / 60	plus

Contig Sequence (481 bp)

>U35_32091 481 Hv_44K_v2
GGTCAGGCAGCTTACTTGTCAAAGCATCATGACTTTTACTCAAACTCTCAAGTTGGATTT
TACATCGCAGTTCCAGATAAGGTGAGATGGCCTGTTCTTGTACTGGCTATTCTGGCTTCA
GTTGTTGGAAGCCAAGCAATCATCAGCGGAACATTCTCGATAATCAATCAGAGTCAGTCC
CTAAGCTGCTTCCCTAGGGTAAAAGTTGTACACACATCTGAGAAAATTCATGGCCAGATA
TACATCCCTGAGATCAACTGGCTACTCATGATCCTCTGCATTGCTGTGACTGTTGGATTT
AGAGACACTAAGCACATGGGAAACGCATCCGGACTAGCAGTGATCACTGTGATGCTGGTT
ACCACATTCCTGACATCCCTTGTGATCATGGTGTGCTGGCACAAGCCACCCCTGCTTGCC
CTGGGCTTCCTCCTCTTCTTCGGTTCGTCGAGGCGCTCTACTCTCGCGTCACTCATCAGT
T

Homology of Contig U35_32091 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os03g21890.1	794	2e-84	protein\|potassium transporter, putative, expressed
Brachypodium v1_2	Bradi1g63100.1	787	5e-88
Arabidopsis v10	AT2G40540.1	794	1e-69	\| Symbols: KT2, ATKT2, SHY3, KUP2, ATKUP2, TRK2 \| potassium transporter 2 \| chr2:16931445-16934516 FORWARD LENGTH=794