barSeed - Barley Seed Development Database

Probe CUST_4957_PI390587928

Source Contig U35_19020

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_4957_PI390587928	Hv_44K_v2	TTTTTGTTCAACTGGGCACCGTAGGACGGATCGATTGGTTGCCCTTTCTTCCAATTATTC	1004	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_61453.1	3875	2e-24	286 - 345	100	60 / 60	minus	ABC50730
MLOC	MLOC_61453.2	3051	2e-24	108 - 167	100	60 / 60	minus	ABC50730
JLOC1	JLOC1_40158.1	3051	8e-25	2885 - 2944	100	60 / 60	plus
Harvest21	ABC50730	543	3e-25	41 - 100	100	60 / 60	minus	ABC50730
Harvest21	ABC11526	1150	3e-25	1005 - 1064	100	60 / 60	plus
Harvest35	U35_19020	1149	3e-25	1005 - 1064	100	60 / 60	plus

Contig Sequence (1149 bp)

>U35_19020 1149 Hv_44K_v2
GTTCCATTGGAAGCAGTATGAGCTGGAGCCCCTCTCATGGAAGAAGAGGCTCAACATCGC
CCTCGACGTTGCTCGTGGAATGGAATATCTTCACACCCTCGCACAGCAGTGCTACATTCA
CAGGGATCTTAAGTCAGCAAACATTCTACTCGGCGATGATTTCCGAGCAAAGGTCTCAGA
TTTCGGGCTCCTTAAATCTGCACCGGACGGCAACTTCTCCGTGGCAACCAGACTGGCTGG
AACTTTTGGATACTTGGCACCTGAATATGCCGTGACCGGAAAAATCACAACAAAAGCAGA
TGTCTTCAGCTTCGGGGTGGTGCTGATGGAGCTGATAACCGGAATGACGGCCATCGACGA
GAGACGCATCGACGAGGAAACCCGGTATCTGGCCTCGTGGTTCTGTCAGATAAGGAAGGA
CGAAGAGAAGTTCAGGGCAGCCATCGACCCGACCCTGGAGCTCACCGACGAGATCTTCGA
GAGCATCTCGGTGATCGCGGAGCTCGCCGGCCACTGCACCTCCCGGGAGCCCTCCCAGCG
GCCGGACATGGGGCACGCCGTGACGGTGCTGGTGCCCATGGTGGAGAAGTGGAAGCCGTC
CAACAACGAGGCCGAGGACTACATGGGCATCGACCTGCACCTGCCACTGCTCCAGATGGT
GAAGGGATGGCAGGAGTCAGAGGCGAGCATGACCGACGGGAGCATCATGAGCCTGAGCCT
CGAAGACAGCAAGGGCAGCATCCCTGCCCGGCCCGCCGGGTTCGCCGAGTCCTTCACCTC
CGCCGACGGCCGGTGAAGAACCACCATTCCCATCGTCACCGCCACCATGTCTACAAGAAA
TAAGTACATTGTCTCTCCCGGACCTCATCATCCCCTGTTTCCGCACAGCGTTTCTTCTGT
AGGTAAAGAGTAAAGGAGCGCGCCGTTCGTCGTCGTCGTCCATGCGCTTGTGCTTCTGCC
GTCGCCGCTGTAGATAGACATCGTGTCTTGTTTTTTTGTTCTCTTTTTTGTTCAACTGGG
CACCGTAGGACGGATCGATTGGTTGCCCTTTCTTCCAATTATTCCAGTCTTGAGACTGAA
GCTTCTGGCTTTTACCTAGCAATCAAATCAAATCATATAATGCTTCTTTGATAAAAAAAA
AAAAAAAAA

Homology of Contig U35_19020 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os04g58910.1	939	2e-161	protein\|receptor protein kinase TMK1 precursor, putative, expressed
Brachypodium v1_2	Bradi5g26550.1	950	5e-172
Arabidopsis v10	AT3G23750.1	928	2e-96	Leucine-rich repeat protein kinase family protein \| chr3:8558332-8561263 FORWARD LENGTH=928