barSeed - Barley Seed Development Database

Probe CUST_4952_PI390587928

Source Contig U35_19025

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_4952_PI390587928	Hv_44K_v2	TGCTGAACAGTGGAATATGGGTGTAAGAACTACTTTACTTGAATAGTAGAATATTCCTCC	512	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_17585.1	2210	2e-24	90 - 149	100	60 / 60	minus	ABC10365
MLOC	AK249918.1	1421	7e-23	1340 - 1399	98	59 / 60	plus	ABC10365
MLOC	AK354378	4429	7e-23	930 - 989	98	59 / 60	minus	ABC10365 ABC10837
JLOC1	JLOC1_12140.1	1571	8e-25	73 - 132	100	60 / 60	minus
Harvest21	ABC10366	593	3e-25	513 - 572	100	60 / 60	plus
Harvest35	U35_19025	593	3e-25	513 - 572	100	60 / 60	plus

Contig Sequence (593 bp)

>U35_19025 593 Hv_44K_v2
CATTCATCCCGTTCTTGGTGCTGCTTGGGCCATATCTATTACTACTTGCAGTGCAGATGC
TGACCGAGACGCTTACATGGCACTGGAAATCGCCGGTTTGGTTGGTGGCCCCAGTCGTTT
ACGAGGGCTACCGGGTGCTACAGCTGATGAGGGGCCTCCAGTTGGCCGGCGAGATCGCTG
CCCCTGGGTGGATGGTGCAGAGTCTCCGTGGCTTGGTGACCTGGTGGGTGCTGGTCCTTG
GAATTCAGTTGATGCGCGTTGCTTGGTTTGCTGGGCTCAATTTCGCAAGTAATCCAAGCT
ATGGGTCGAGCGATGATGTGAACAAGTAGGTTCCTTTGTGCTACTCTGCTTCTGCTCACT
GCACAATAGAATGGGTGTCATGCTAGTTCTGGTGCATTTGTATTTGTCAGATGTAGTGCA
TATAGAATAAAAATGGTGTTTGACTGATAGAAACTTTGAATCCTGCGACTGCTGTAGTAT
ACATATAAAATGAAAATTGTACATTGGCGTGATGCTGAACAGTGGAATATGGGTGTAAGA
ACTACTTTACTTGAATAGTAGAATATTCCTCCATTCAAAAAAAAAAAAAAAAA

Homology of Contig U35_19025 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os04g45200.2	383	2e-51	protein\|DNA binding protein, putative, expressed
Brachypodium v1_2	Bradi5g16850.1	331	4e-56
Arabidopsis v10	None