barSeed - Barley Seed Development Database

Probe CUST_4951_PI390587928

Source Contig U35_19026

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_4951_PI390587928	Hv_44K_v2	TTCTTACAGAATGTGGAATCTAATTGCCAGCATATTGGGCTTCGTTGCTCCTTTGGCCCT	730	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK249918.1	1421	2e-24	727 - 786	100	60 / 60	plus	ABC10365
MLOC	AK354378	4429	2e-24	1543 - 1602	100	60 / 60	minus	ABC10365 ABC10837
MLOC	MLOC_17585.1	2210	2e-24	703 - 762	100	60 / 60	minus	ABC10365
MLOC	MLOC_17585.2	716	2e-24	575 - 634	100	60 / 60	minus	ABC10365
JLOC1	JLOC1_12140.1	1571	8e-25	686 - 745	100	60 / 60	minus
Harvest21	ABC10365	1260	3e-25	594 - 653	100	60 / 60	plus	ABC10365
Harvest35	U35_19026	1397	3e-25	731 - 790	100	60 / 60	plus

Contig Sequence (1397 bp)

>U35_19026 1397 Hv_44K_v2
GTTGCGTATTGGGCCGGGTTGCCCCTTCCACCTCTCGCTCAAGCCGCGCGTCCGCCGCTG
GGGAGAAGAACAAGAACTGCTCGGAGGCTTCCTCACCCCCCGAGGAGCTCCGGCCGGCGA
GAAGCCGGGGGAAATCCGATCAGTGTTGGAATTCGACGTCCTGTACCATGGCTTCTTTGC
TTTGTTCACAGATAAAACTAAACAGAGCATATGTTAGGAGGCAGGTCCATGAGAATAGAC
TTACGAGATTGCCCAGGTCGCTTCATTGGAGCCCCTTGCAGTCAGGCCATTTTAAAAACA
TTGCATTGCGATGCACTAAGAATTTGCCTTGGGAGGCCTCTCTTCCGTATGCTTCTGCAG
AGGACGATGCCAGCATTATCATGGGAACAAATGTTGTTGAAGCTATTGATACAGAAGAAG
CTCCAGAAATTCCAATCCTCCAGAGTGATCAGGATGTTGTGGACGTGCAGAATGAACCTT
CTAGGCAGCTAGCAACATTTAAACTGCCAATGTGGCTGTTAGGGCCTTCGGTTCTGTTGG
TTACCGGTATAGTTCCAACTTTGTGGCTGCCATTGCCTTCAGTGTTCCTTGGCCCTAACA
TCGCTGGCCTTTTATCCCTAGTGGGACTCGACTGCATCTTTAACATGGGAGCAATGCTGT
TTTTCCTTATGGCCGACGCGTGTGGGCGTCCGGAGAACAATTCATTCGACCTGACAAGGC
AGATCCCAACTTCTTACAGAATGTGGAATCTAATTGCCAGCATATTGGGCTTCGTTGCTC
CTTTGGCCCTGCTTTTCGCGTCTCACGGGGGAGCTCTGCAGCCGCATCTACCATTCATCC
CGTTCTTGGTGCTGCTTGGGCCATATCTATTACTACTTGCAGTGCAGATGCTGACCGAGA
CGCTTACATGGCACTGGAAATCGCCGGTTTGGTTGGTGGCCCCAGTCGTTTACGAGGGCT
ACCGGGTGCTACAGCTGATGAGGGGCCTCCAGTTGGCCGGCGAGATCACTGCCCCTGGGT
GGATGGTGCAGAGTCTCCGTGGCTTGGTGACCTGGTGGGTGCTGGTCCTTGGAATTCAGT
TGATGCGAGTTGCTTGGTTTGCTGGGCTCAATTTCGCAAGCAACCCAAGCTATGGGTCGA
GCGATGATGTGAACAAGTAGGTTCCTTCGTGCTACTCTGCTTCTGCTCACTGCACAGTAG
AATGGGTGTCGTGTTAGTTCTGGTGCATTTGTATTTGTCAGATGTAGCGCATATAGAATA
AAAATGGGTTTTGACTGATAGAAACTTTGAATCCTGCGACTGCTGTAGTATACATATAAA
ATGAAAATTGTACATTGGCGTGATGCTGAACAGTCGAATATGGGTGTAAGAACTACTTTA
CTTAATAAGTAGAATAT

Homology of Contig U35_19026 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os04g45200.2	383	0.0	protein\|DNA binding protein, putative, expressed
Brachypodium v1_2	Bradi5g16850.1	331	0.0
Arabidopsis v10	AT3G60590.3	404	9e-94	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G48460.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). \| chr3:22398228-22399753 FORWARD LENGTH=404