barSeed - Barley Seed Development Database

Probe CUST_4944_PI390587928

Source Contig U35_21343

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_4944_PI390587928	Hv_44K_v2	TACCACAACTTAGATTGCAATATCGGTTGCTATAATGATATCCAACTCGGCTCCCGGGAG	613	GeneList: brown MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	1.761	1.719	1.046	0.872	0.376	0.461
Raw	1019.002	1575.530	829.937	1098.778	165.045	219.310

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
JLOC1	JLOC1_29330.1	815	8e-25	707 - 766	100	60 / 60	plus
Harvest21	ABC16251	716	3e-25	614 - 673	100	60 / 60	plus	ABC16251
Harvest35	U35_21343	716	3e-25	614 - 673	100	60 / 60	plus

Contig Sequence (716 bp)

>U35_21343 716 Hv_44K_v2
GCTTGGTCCTGCTTTTCTGTTGAAGCTGTACATTGCAGGAGCACTTGTTGGATCCACATT
CTACTTAGTAGAAAAGGCTTTTATAGCTCCAAGGAGACAGCTTTATGCAGGGTGGGACAT
GCAAAGAAGTAACTCGCTTGGTGCAAGTGCTGCAGTTAATGCCATTGTGCTTCTTCACAT
TTTTCTCAAACCAAAGGGACGGATCTACCTTTACCTGCTCATTCCTGTTCCAGCTGCCTT
CGTGGGGGCTGCTTGGATTGGTCTTGATTTGTGGAGGGCGAAAGAGGGTCAGGGTCAGAC
ATCAGCTGCTTCTCATTTAGGGGGCACCCTAGTGGCTGCTCTTGTGTGGGCTCGAATTAG
GAAGGGCTGGATCTGACCATGCAGCTTGTTCATATGGAAATCTGACCGGCTTTCCCAGCT
GGTGGTCTCTCCGTTTGACATTTGTTGTTACACGAGAAAGTTCTTGTGGGTGGAGGGAAT
ACTCTGCTGCTTATCGTCCAAGTTTCTGATCTAGAAGTCCTCAAACAAATTCTAGATAGC
ATCATGGCAGATATTGCCAACTGATTGGCCGGAATTTACAATCTTATTATTGTGGCTTGC
AGGAGCAATAACATACCACAACTTAGATTGCAATATCGGTTGCTATAATGATATCCAACT
CGGCTCCCGGGAGCACATGCGCCTACGTGCCGAAAATGTTTCTTTTTCAAAAAAAA

Homology of Contig U35_21343 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os01g55740.1	308	2e-51	protein\|OsRhmbd4 - Putative Rhomboid homologue, expressed
Brachypodium v1_2	Bradi2g50680.3	326	1e-53
Arabidopsis v10	None