barSeed - Barley Seed Development Database

Probe CUST_4940_PI390587928

Source Contig U35_21348

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_4940_PI390587928	Hv_44K_v2	TACAAATAGCTAAATCTCCAAAGGCCCCACTTCTCGGAAGTTCAAGATTGTCTGCTTCCA	844	GeneList: brown4 MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	1.563	1.135	1.517	0.961	0.802	0.637
Raw	141.914	131.410	189.387	159.916	54.054	48.159

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK361911	3703	2e-24	749 - 808	100	60 / 60	plus	ABC18383
MLOC	MLOC_680.1	1871	2e-24	1457 - 1516	100	60 / 60	minus	None
MLOC	MLOC_680.4	360	2e-24	148 - 207	100	60 / 60	minus	None
MLOC	MLOC_680.3	581	2e-24	170 - 229	100	60 / 60	minus	None
MLOC	MLOC_680.2	804	2e-24	553 - 612	100	60 / 60	minus	None
JLOC1	JLOC1_419.1	816	8e-25	204 - 263	100	60 / 60	plus
Harvest21	ABC38108	676	3e-25	594 - 653	100	60 / 60	plus
Harvest35	U35_21348	927	3e-25	845 - 904	100	60 / 60	plus

Contig Sequence (927 bp)

>U35_21348 927 Hv_44K_v2
TCGATTTCTGTTGGCCTACTGAGCCATCACCATTTTACCCTTTCCTCTCTTCGATTTCCC
ATTCTCTTTTCCAAAACCCTAGCCCCACATCGGCGCCGTAACATGGCGTCTCGGGGAGGT
TACGAAGGCGGCTCCGCCACGGGAGGCAAGATCCGTAGGCGCCCTCCCTTCCGCGCCGCA
GCTGCGTCACCCTATGCGCGCCCGGCTGCCCCTATTCATCCAGCGTCACGCTGCAGCGAA
GGGAGTGGCTGGCTCGCCCGTCTCATCTCCGGTGGCGCATCGCGTCTCCTCTCCTCTGTG
TTTCGCAAGCCGCCTCCGCAGCTCGCTGCGCCTACGCTTTCGGAACCGGCGTTGGTCGAC
GCTCCTTACTCGCCGCCGCCGCCGCCTTTAGAGAACGACATTCTTGAAGAAGAAAACGGA
GGAGGGACTGCTAATAATCTGTCTACTGATAATCCTGAAAATTCTGCCATTGATGGAGAT
GATTGTCTAAGTTCTTGTTGCAATGGTAGTATGGATCTTGAAGAATTGTTGAAGCAGAAG
ACCTTTACAAGGAGTGAGTTTGAATATTTGACTGGGTTGTTGCGATCCAGAACTATTGGA
TCCAATACAGTGCAGTCAGAAATTAATAATATAAAGCAAACATTGTCTCCTAAGAAGGAA
AAGGGGTCTAGAGACTTACCTGTTGATTTCTCCATTAGATCATACAATGTCGCTGATCAA
GTTGCTTCACCTGCAGAACTTGCAAAGGCATATATGGGTTCAAGATGCTCAGAGGGGCCA
CCGTTACGCCTTAGATTGCATAAACCCTCCTCCCTTTCTGTCAAATCAATAGAATCTGGC
ACCATACAAATAGCTAAATCTCCAAAGGCCCCACTTCTCGGAAGTTCAAGATTGTCTGCT
TCCACACCCTTTGATCGCCTTGGAAGC

Homology of Contig U35_21348 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value
Rice v7	None
Brachypodium v1_2	Bradi4g07760.1	1073	2e-53
Arabidopsis v10	None