barSeed - Barley Seed Development Database

Probe CUST_4939_PI390587928

Source Contig U35_21349

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_4939_PI390587928	Hv_44K_v2	CAGTTTACAAGAAGTGAAAATGATCCAGTTGAAGGCACATTGATGCCACAAAATCTTAAA	999	GeneList: blue MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	1.421	1.766	1.375	0.938	0.399	0.579
Raw	223.843	449.921	294.530	306.563	45.398	74.463

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK357750	2680	2e-24	2401 - 2460	100	60 / 60	minus	ABC19645
MLOC	MLOC_22257.1	1870	2e-24	1005 - 1064	100	60 / 60	plus	ABC19645
MLOC	MLOC_22256.4	2139	2e-24	1764 - 1823	100	60 / 60	plus	ABC19645
MLOC	MLOC_22256.3	4207	2e-24	3034 - 3093	100	60 / 60	plus	ABC19645
JLOC1	JLOC1_15429.1	1489	8e-25	813 - 872	100	60 / 60	minus
JLOC1	JLOC1_15428.3	3896	8e-25	2741 - 2800	100	60 / 60	plus
JLOC1	JLOC1_15428.2	4150	8e-25	2995 - 3054	100	60 / 60	plus
JLOC1	JLOC1_15428.1	4299	8e-25	3144 - 3203	100	60 / 60	plus
Harvest35	U35_21349	1073	3e-25	1000 - 1059	100	60 / 60	plus

Contig Sequence (1073 bp)

>U35_21349 1073 Hv_44K_v2
GACAATATTTTATCTCCTACCTCAACAACCGTGGAAGAAGACGATACAAATACCGCTGGC
GAGAGGATTATTGCAAAAGCTATTGTAGATCAAACAAAGGAAGGAGTTAGTGCTGAAGAC
ATTGATCCTGATAGAGTGGAGTCCCGATCTGTATTCGTCAAGAATTTGAATTTCAAGACT
ACAGATGAATCGTTAAAGCAGCATTTCAGTACAAAATTGAAGACTGGCAGCCTTAAAAGT
GCAACGGTGAAAAAACATATTAAGAAAGGCAAGAATGTTTCAATGGGATTTGGCTTCGCT
GAGTTTGATTCGGTTGAAACTGCAACCAGTGTGTGCAAGGACCTACAGGGAACGATTTTG
GATGGGCATGCTCTGATCTTACAACTATGCCATGGGAGAAAGGATGGTCAAACTGCGAAG
AAAAATGAGAAGGATAAGAGTTCAACCAAACTGCTTGTGCGAAATGTAGCATTTGAGGCA
ACTGAAAAGGACCTGAGGCAATTATTTAGTCCATTTGGCCAGATCAAAACCCTCAGGCTG
CCTATGAAGTTTGGAAGCCACAGAGGTTTCGCGTTTGTCGAATTCGTCACGAAGCAAGAG
GCACAGAACGCCCTGCAAGCCCTGGCAAGCACTCATCTCTACGGCCGACACCTGGTGATT
GAGCGAGCAAAAGAGGGAGAGACGCTTGAAGAACTGCGAGCAAGAACCGCCGCTCAGTTT
GTGGACGAACAGAGTGGTTTCCAGCGGATGTCCACGAAGAGGAAACAGACAAGTCTGGTG
GACGAAGGCTCTGTTAAGTTTTCAAGGATAGTAGAATGATAATGTTCTGGGGGTAAAATA
CAAGGCAACAAATTTTTGACCATGTAGTATGTGATATGATAGCATCACTCATCTAAGGCG
AGCCTCTTCTATCTTCTCTTGTATTTTTGGGTTAGTGCTGGAGAAAAGAAACTGCAGCAA
CTCGTGTGTGGAAAATGAAATACAGTGATCCTAAGAATGCAGTTTACAAGAAGTGAAAAT
GATCCAGTTGAAGGCACATTGATGCCACAAAATCTTAAAAAAAAAAAAAAAAA

Homology of Contig U35_21349 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os04g52200.1	905	1e-163	protein\|RNA recognition motif containing protein, putative, expressed
Brachypodium v1_2	Bradi5g21380.1	874	2e-167
Arabidopsis v10	AT4G19610.1	816	8e-76	nucleotide binding;nucleic acid binding;RNA binding \| chr4:10677482-10681623 FORWARD LENGTH=816